Variant report

Variant	rs11124574
Chromosome Location	chr2:37499289-37499290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37493948..37499584-chr2:37500018..37504344,8	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10166051	0.93[AFR][1000 genomes]
rs10176949	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10177176	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10184179	0.96[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs10190959	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10209937	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1056021	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs11124569	0.96[CEU][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11124578	0.84[CHB][hapmap]
rs1137437	0.92[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs1158218	0.93[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1158219	0.93[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11679617	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11680401	0.84[EUR][1000 genomes]
rs11682607	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11683872	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11685805	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11689794	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11693917	0.85[EUR][1000 genomes]
rs11893943	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12616151	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12618410	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12712532	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13015451	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13420463	0.88[ASN][1000 genomes]
rs1477055	0.82[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap]
rs17020386	0.83[ASN][1000 genomes]
rs17020490	0.83[ASN][1000 genomes]
rs1989172	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs2041836	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268987	0.82[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs2268990	0.81[EUR][1000 genomes]
rs2287093	0.92[CEU][hapmap]
rs2300881	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs2300884	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs2300893	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372993	0.83[EUR][1000 genomes]
rs2888434	0.87[ASW][hapmap];0.96[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3213745	0.96[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes]
rs34819784	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755195	0.96[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3770752	0.88[CEU][hapmap]
rs3770759	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4581878	0.81[ASN][1000 genomes]
rs4670195	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs4670688	0.82[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4670689	0.82[CHB][hapmap]
rs4998429	0.96[CEU][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57361399	0.84[ASN][1000 genomes]
rs6544066	0.86[CHB][hapmap];0.88[CHD][hapmap];0.80[ASN][1000 genomes]
rs6743782	0.88[CEU][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs71398224	0.82[ASN][1000 genomes]
rs72792829	0.93[ASN][1000 genomes]
rs74177070	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7568510	0.82[ASN][1000 genomes]
rs7570547	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7584565	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7589296	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs876462	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs9309004	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs11124574	CEBPZ	cis	cerebellum	SCAN
rs11124574	CEBPZ	cis	normal skin	skin_eQTL
rs11124574	CEBPZ	cis	Thyroid	GTEx
rs11124574	QPCT	cis	parietal	SCAN
rs11124574	CEBPZ	cis	Esophagus Mucosa	GTEx
rs11124574	PRKD3	cis	lung	GTEx
rs11124574	CEBPZ	cis	Nerve Tibial	GTEx
rs11124574	CEBPZ	cis	lung	GTEx
rs11124574	CEBPZ	cis	Esophagus Muscularis	GTEx
rs11124574	CEBPZ	cis	lymphoblastoid	seeQTL
rs11124574	CEBPZ	cis	multi-tissue	Pritchard
rs11124574	RP11-423P10.2	cis	Esophagus Muscularis	GTEx
rs11124574	CEBPZ	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
3	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:37463400-37509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
6	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:37476800-37501400	Weak transcription	Esophagus	oesophagus
9	chr2:37477400-37502200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:37479400-37520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr2:37479800-37501600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:37480600-37505000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr2:37481600-37500800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:37482600-37501800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:37484200-37501600	Weak transcription	K562	blood
17	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:37484400-37511600	Weak transcription	Fetal Brain Male	brain
19	chr2:37484600-37500000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:37484600-37500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:37484600-37501400	Weak transcription	Colonic Mucosa	Colon
22	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
23	chr2:37486200-37501600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr2:37486400-37501200	Weak transcription	Psoas Muscle	Psoas
25	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
26	chr2:37487600-37521200	Weak transcription	Brain Angular Gyrus	brain
27	chr2:37489200-37500000	Strong transcription	NHDF-Ad	bronchial
28	chr2:37490400-37503400	Strong transcription	Liver	Liver
29	chr2:37490400-37507000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:37490400-37510800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:37490600-37521000	Strong transcription	Dnd41	blood
32	chr2:37491000-37503200	Strong transcription	Fetal Muscle Leg	muscle
33	chr2:37491000-37512400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr2:37491200-37501600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr2:37491200-37503600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:37491200-37510200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:37491200-37510200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr2:37491600-37503000	Strong transcription	Fetal Thymus	thymus
39	chr2:37491800-37501600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr2:37491800-37502600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr2:37491800-37503400	Strong transcription	Fetal Intestine Large	intestine
42	chr2:37491800-37509400	Strong transcription	Osteobl	bone
43	chr2:37492000-37503600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr2:37492000-37507000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:37492000-37509600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:37492000-37510800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr2:37492000-37511200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr2:37492200-37500200	Strong transcription	HepG2	liver
49	chr2:37492200-37502000	Strong transcription	Fetal Lung	lung
50	chr2:37492400-37510000	Weak transcription	Fetal Heart	heart

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