Variant report

Variant	rs11124588
Chromosome Location	chr2:37749792-37749793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10084269	0.90[ASN][1000 genomes]
rs10165975	0.90[ASN][1000 genomes]
rs10177794	0.85[ASN][1000 genomes]
rs10177859	0.85[ASN][1000 genomes]
rs10180573	0.91[ASN][1000 genomes]
rs10184286	0.94[ASN][1000 genomes]
rs12151799	0.92[ASN][1000 genomes]
rs12472489	0.91[ASN][1000 genomes]
rs13407307	0.91[ASN][1000 genomes]
rs4274577	0.89[ASN][1000 genomes]
rs4352210	0.93[ASN][1000 genomes]
rs4387769	0.91[ASN][1000 genomes]
rs4430920	0.90[ASN][1000 genomes]
rs4461243	0.90[ASN][1000 genomes]
rs4538180	0.90[ASN][1000 genomes]
rs4670726	0.89[ASN][1000 genomes]
rs4670727	0.90[ASN][1000 genomes]
rs62135619	0.91[ASN][1000 genomes]
rs62135620	0.91[ASN][1000 genomes]
rs62135623	0.88[ASN][1000 genomes]
rs6544089	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6544090	0.89[ASN][1000 genomes]
rs6705305	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6759677	0.87[ASN][1000 genomes]
rs7419452	0.87[ASN][1000 genomes]
rs7589042	0.90[ASN][1000 genomes]
rs7593076	0.91[ASN][1000 genomes]
rs9309009	0.91[ASN][1000 genomes]
rs9309010	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37744600-37751200	Weak transcription	Psoas Muscle	Psoas
2	chr2:37748600-37749800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:37748600-37750800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr2:37748800-37749800	Enhancers	Adipose Nuclei	Adipose
5	chr2:37749000-37751200	Enhancers	Colon Smooth Muscle	Colon
6	chr2:37749200-37749800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:37749200-37750000	Weak transcription	Fetal Heart	heart
8	chr2:37749200-37752800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:37749400-37749800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:37749400-37750400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:37749600-37750800	Weak transcription	K562	blood
12	chr2:37749600-37751200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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