Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10460925	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12054089	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12233505	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629752	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12630587	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1404295	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1524556	0.91[ASN][1000 genomes]
rs17019219	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17019297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17019364	0.87[ASN][1000 genomes]
rs17019369	0.87[ASN][1000 genomes]
rs2691093	0.80[CHB][hapmap]
rs3772885	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3772888	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3772897	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3772899	0.90[CHB][hapmap]
rs3772902	0.90[CHB][hapmap]
rs3772904	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs61156634	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61540531	0.87[ASN][1000 genomes]
rs61572709	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6765293	0.84[ASN][1000 genomes]
rs6791857	0.87[ASN][1000 genomes]
rs998206	0.95[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart
2	chr3:81866400-81872400	Weak transcription	Psoas Muscle	Psoas
3	chr3:81867000-81872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:81867200-81872200	Weak transcription	Pancreas	Pancrea
5	chr3:81870000-81873200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:81870800-81872200	Enhancers	Dnd41	blood
7	chr3:81870800-81872600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:81871000-81871200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:81871000-81871400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:81871000-81871600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:81871000-81871600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:81871000-81871600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:81871000-81871800	Enhancers	Brain Anterior Caudate	brain
14	chr3:81871000-81872000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:81871000-81873800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:81871000-81874400	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search: