Variant report

Variant	rs11127747
Chromosome Location	chr3:82016449-82016450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13068700	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13085470	0.83[ASN][1000 genomes]
rs35779564	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4389498	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440144	0.88[EUR][1000 genomes]
rs4452351	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4481177	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6548784	0.90[EUR][1000 genomes]
rs6764033	0.83[ASN][1000 genomes]
rs6785385	0.90[EUR][1000 genomes]
rs6790351	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6809792	0.89[EUR][1000 genomes]
rs6809793	0.89[EUR][1000 genomes]
rs7431326	0.84[ASN][1000 genomes]
rs9826743	0.95[ASN][1000 genomes]
rs9968070	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82013200-82018600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:82013600-82017400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:82014200-82018400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:82014400-82017600	Weak transcription	Fetal Heart	heart
5	chr3:82014600-82017400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:82014600-82018000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:82015000-82017600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:82015600-82018200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:82015800-82017600	Weak transcription	Brain Germinal Matrix	brain
10	chr3:82016200-82016800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:82016200-82017400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:82016200-82017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:82016200-82017800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:82016400-82017400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links