Variant report

Variant	rs11127877
Chromosome Location	chr3:85127683-85127684
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10433523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127873	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127876	1.00[CHB][hapmap]
rs11127880	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs13059287	0.83[ASN][1000 genomes]
rs13061527	0.85[CHB][hapmap]
rs13072305	0.82[EUR][1000 genomes]
rs13097560	1.00[CHB][hapmap]
rs1376938	0.85[CHB][hapmap]
rs1545926	0.86[CHB][hapmap]
rs2062431	0.82[EUR][1000 genomes]
rs2171140	0.84[AMR][1000 genomes]
rs2171141	0.85[ASN][1000 genomes]
rs2200461	0.82[EUR][1000 genomes]
rs2200464	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2220243	0.82[EUR][1000 genomes]
rs2220244	0.85[CHB][hapmap]
rs2326126	0.82[EUR][1000 genomes]
rs2326128	0.81[EUR][1000 genomes]
rs4410457	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856560	0.82[EUR][1000 genomes]
rs62250629	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6549011	1.00[CEU][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6549012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6765011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768559	0.82[EUR][1000 genomes]
rs6775464	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6775752	1.00[CHB][hapmap]
rs6788656	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6790864	0.91[CEU][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796256	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6796393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798922	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7623714	0.85[CHB][hapmap]
rs7632628	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs7632909	0.85[ASN][1000 genomes]
rs7636138	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7645049	0.85[ASN][1000 genomes]
rs7645952	0.82[EUR][1000 genomes]
rs7646739	0.83[ASN][1000 genomes]
rs9309970	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9814390	0.82[EUR][1000 genomes]
rs9814835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9819278	0.86[CHB][hapmap]
rs9820587	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9855054	0.82[EUR][1000 genomes]
rs9869902	0.82[EUR][1000 genomes]
rs9875381	0.85[CHB][hapmap]
rs9883252	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85116600-85130400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:85118200-85130400	Weak transcription	Brain Substantia Nigra	brain
3	chr3:85122400-85130800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:85124200-85130400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:85125000-85130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:85125000-85130600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:85125400-85130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:85125400-85130600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:85125600-85130400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:85125600-85130400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:85125600-85130600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:85127400-85128000	Enhancers	Brain Hippocampus Middle	brain
13	chr3:85127600-85130400	Weak transcription	Brain Inferior Temporal Lobe	brain

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