Variant report

Variant	rs1113260
Chromosome Location	chr1:211236154-211236155
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10779549	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12027884	0.81[AMR][1000 genomes]
rs12122909	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12124026	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12142472	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1846945	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4131710	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4265492	0.90[ASN][1000 genomes]
rs4494205	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4511184	0.83[ASN][1000 genomes]
rs4592307	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951493	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4951495	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951499	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4951716	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6540653	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6702607	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211224600-211242200	Weak transcription	A549	lung
2	chr1:211227400-211239000	Weak transcription	Fetal Brain Male	brain
3	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211229400-211236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:211230400-211236600	Weak transcription	HSMMtube	muscle
7	chr1:211234600-211248400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:211235000-211237000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:211235800-211237200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211236000-211248600	Strong transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links