Variant report
| Variant | rs11133039 |
|---|---|
| Chromosome Location | chr4:175397646-175397647 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1035804 | 0.88[ASN][1000 genomes] |
| rs11724251 | 0.88[CEU][hapmap];0.80[AMR][1000 genomes] |
| rs11725050 | 0.83[ASN][1000 genomes] |
| rs11930740 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12641259 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12642478 | 0.84[ASN][1000 genomes] |
| rs12643801 | 0.82[ASN][1000 genomes] |
| rs12644593 | 0.84[ASN][1000 genomes] |
| rs12646844 | 0.82[ASN][1000 genomes] |
| rs1365611 | 0.84[ASN][1000 genomes] |
| rs1365612 | 0.84[ASN][1000 genomes] |
| rs1426941 | 0.81[ASN][1000 genomes] |
| rs1426947 | 0.87[CEU][hapmap];0.80[AMR][1000 genomes] |
| rs17293172 | 0.84[ASN][1000 genomes] |
| rs17293403 | 0.84[ASN][1000 genomes] |
| rs1820520 | 0.84[ASN][1000 genomes] |
| rs2244093 | 0.88[ASN][1000 genomes] |
| rs2244289 | 0.82[ASN][1000 genomes] |
| rs2332897 | 0.84[ASN][1000 genomes] |
| rs2555622 | 0.88[ASN][1000 genomes] |
| rs2555623 | 0.88[ASN][1000 genomes] |
| rs2612658 | 0.81[CEU][hapmap] |
| rs2612662 | 0.86[ASN][1000 genomes] |
| rs2612663 | 0.88[ASN][1000 genomes] |
| rs2612679 | 0.88[ASN][1000 genomes] |
| rs56808147 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs58959177 | 0.82[ASN][1000 genomes] |
| rs62337119 | 0.80[ASN][1000 genomes] |
| rs6553794 | 0.86[ASN][1000 genomes] |
| rs6553795 | 0.85[ASN][1000 genomes] |
| rs6553796 | 0.86[ASN][1000 genomes] |
| rs6813684 | 0.84[ASN][1000 genomes] |
| rs6814296 | 0.86[ASN][1000 genomes] |
| rs7673142 | 0.84[ASN][1000 genomes] |
| rs8752 | 0.88[CEU][hapmap] |
| rs930025 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:175396000-175442800 | Weak transcription | Esophagus | oesophagus |
