Variant report

Variant	rs11133825
Chromosome Location	chr5:15953132-15953133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6859383	0.96[ASN][1000 genomes]
rs7732073	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs982484	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15936800-15954600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:15938400-15958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:15939600-15953600	Weak transcription	Ovary	ovary
4	chr5:15939600-15956400	Weak transcription	HSMM	muscle
5	chr5:15940000-15959000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:15941600-15953600	Weak transcription	Adipose Nuclei	Adipose
7	chr5:15942200-15955600	Weak transcription	HSMMtube	muscle
8	chr5:15942200-15957800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:15942800-15955400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:15943600-15954600	Weak transcription	Aorta	Aorta
11	chr5:15944000-15954600	Weak transcription	Left Ventricle	heart
12	chr5:15944000-15955200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:15945000-15955400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:15948400-15953400	Weak transcription	Fetal Lung	lung
15	chr5:15948800-15953600	Weak transcription	Fetal Heart	heart
16	chr5:15951400-15953800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:15951400-15957000	Weak transcription	Fetal Stomach	stomach
18	chr5:15951400-15959800	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:15952200-15957200	Weak transcription	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links