Variant report

Variant	rs11135387
Chromosome Location	chr5:92695225-92695226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92671979..92673902-chr5:92694437..92696001,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10064251	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072317	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10463227	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12152903	0.93[ASN][1000 genomes]
rs1471289	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs187931	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2343708	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs269696	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs269700	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs269701	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269702	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs269703	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs269706	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269707	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869111	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4869195	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6420123	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs898597	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9314085	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984645	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92692200-92696800	Enhancers	HMEC	breast
2	chr5:92693600-92695400	Enhancers	Osteobl	bone
3	chr5:92693600-92696000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:92693600-92696200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:92693800-92695800	Enhancers	Fetal Lung	lung
6	chr5:92694000-92695600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:92694600-92695400	Enhancers	Fetal Kidney	kidney
8	chr5:92694600-92695800	Enhancers	Adipose Nuclei	Adipose
9	chr5:92694600-92695800	Enhancers	NHDF-Ad	bronchial
10	chr5:92694600-92695800	Enhancers	NHLF	lung
11	chr5:92694600-92696000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:92694800-92695600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:92694800-92695800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:92694800-92695800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:92695000-92695400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:92695000-92695400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:92695000-92695600	Flanking Active TSS	NH-A	brain
18	chr5:92695000-92695800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:92695000-92696600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:92695000-92697000	Enhancers	HSMM	muscle
21	chr5:92695200-92695600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:92695200-92695600	Active TSS	Hela-S3	cervix
23	chr5:92695200-92695600	Active TSS	HUVEC	blood vessel
24	chr5:92695200-92695800	Enhancers	Left Ventricle	heart
25	chr5:92695200-92695800	Enhancers	Ovary	ovary
26	chr5:92695200-92695800	Enhancers	Pancreas	Pancrea
27	chr5:92695200-92695800	Enhancers	Right Atrium	heart
28	chr5:92695200-92695800	Enhancers	A549	lung
29	chr5:92695200-92696000	Flanking Active TSS	NHEK	skin
30	chr5:92695200-92696400	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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