Variant report

Variant	rs11139511
Chromosome Location	chr9:72231935-72231936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10123008	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10746682	0.91[CEU][hapmap];0.92[CHB][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10780527	0.87[CEU][hapmap]
rs10780528	0.87[CEU][hapmap]
rs10780539	0.91[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10867825	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10867828	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10867830	0.95[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139361	0.85[CHB][hapmap]
rs1330334	0.82[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap]
rs1330336	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411440	0.92[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs1556211	0.83[CEU][hapmap]
rs1854702	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1854703	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs1967880	0.87[CEU][hapmap]
rs1970017	0.87[CEU][hapmap]
rs2026150	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2161056	0.86[CEU][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2309515	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744913	0.87[CEU][hapmap]
rs4744917	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4744919	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs7030393	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7031694	0.82[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs986352	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs987653	0.90[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11139511	GDA	cis	parietal	SCAN
rs11139511	ZFAND5	cis	parietal	SCAN
rs11139511	C9orf71	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72215600-72235200	Weak transcription	Aorta	Aorta
2	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
3	chr9:72221200-72237200	Weak transcription	Ovary	ovary
4	chr9:72226200-72236800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:72226600-72234800	Weak transcription	Liver	Liver
6	chr9:72231800-72232200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links