Variant report

Variant	rs1114004
Chromosome Location	chr1:93446714-93446715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10157869	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10159030	1.00[EUR][1000 genomes]
rs13373836	1.00[EUR][1000 genomes]
rs17131669	1.00[EUR][1000 genomes]
rs17131670	1.00[EUR][1000 genomes]
rs17131671	1.00[EUR][1000 genomes]
rs17131672	1.00[EUR][1000 genomes]
rs17131673	1.00[EUR][1000 genomes]
rs17131676	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131677	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394666	1.00[EUR][1000 genomes]
rs59078677	1.00[EUR][1000 genomes]
rs60165854	1.00[EUR][1000 genomes]
rs61318253	1.00[EUR][1000 genomes]
rs6673190	1.00[EUR][1000 genomes]
rs9324344	1.00[EUR][1000 genomes]
rs9324345	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93441000-93447800	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:93442800-93448400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:93444200-93448800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr1:93445400-93448000	Enhancers	Primary B cells from cord blood	blood
5	chr1:93445400-93448800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:93445600-93446800	Enhancers	Primary T cells from cord blood	blood
7	chr1:93445600-93447200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr1:93445600-93448000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:93445600-93448400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:93445800-93447000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:93445800-93447200	Enhancers	Fetal Intestine Large	intestine
12	chr1:93445800-93447200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr1:93445800-93447400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:93445800-93447400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr1:93446000-93447000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:93446000-93447000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:93446000-93447200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr1:93446000-93447800	Enhancers	Fetal Thymus	thymus
19	chr1:93446000-93447800	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr1:93446200-93447000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:93446200-93447000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr1:93446200-93447200	Enhancers	Dnd41	blood
23	chr1:93446200-93447400	Enhancers	Fetal Intestine Small	intestine
24	chr1:93446400-93446800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr1:93446400-93446800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr1:93446400-93446800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr1:93446400-93447000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:93446400-93447000	Enhancers	Duodenum Mucosa	Duodenum
29	chr1:93446400-93447000	Enhancers	Thymus	Thymus
30	chr1:93446600-93446800	Active TSS	GM12878-XiMat	blood

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