Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10868851	1.00[MEX][hapmap]
rs10868852	1.00[MEX][hapmap]
rs11141314	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11141421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11141422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11141432	0.89[ASN][1000 genomes]
rs11141455	0.87[ASN][1000 genomes]
rs11141457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141556	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11141675	0.84[AMR][1000 genomes]
rs11141888	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11141974	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11141997	0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11142075	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs12236622	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs263801	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs265101	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs265106	0.89[ASN][1000 genomes]
rs2987708	0.90[ASN][1000 genomes]
rs443057	0.88[ASN][1000 genomes]
rs4744966	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs624149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70982400-71031200	Weak transcription	Fetal Lung	lung
2	chr9:70987800-71031800	Weak transcription	Fetal Stomach	stomach
3	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
4	chr9:70999000-71031800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:71004600-71027200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:71007000-71031000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:71007600-71022600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:71007600-71032000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:71019200-71019600	Strong transcription	Left Ventricle	heart
10	chr9:71019400-71020000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:71019400-71020200	Enhancers	Skeletal Muscle Male	skeletal muscle

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