Variant report

Variant	rs11141997
Chromosome Location	chr9:71031845-71031846
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10868852	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11139433	0.83[AFR][1000 genomes]
rs11140134	0.83[AFR][1000 genomes]
rs11141314	0.81[AMR][1000 genomes]
rs11141421	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11141422	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11141457	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11141466	0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11141556	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11141675	0.81[AMR][1000 genomes]
rs11141888	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11141974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142075	0.88[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12236622	0.83[AFR][1000 genomes]
rs17056009	0.90[AMR][1000 genomes]
rs624149	0.89[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
2	chr9:71007600-71032000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:71019600-71032000	Weak transcription	Left Ventricle	heart
4	chr9:71020200-71032000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:71027600-71033000	Weak transcription	Psoas Muscle	Psoas
6	chr9:71027600-71041800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:71030200-71032000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:71030800-71032800	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:71031000-71033000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:71031000-71033000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:71031000-71035600	Enhancers	Fetal Heart	heart
12	chr9:71031200-71032200	Enhancers	Fetal Lung	lung
13	chr9:71031200-71035200	Enhancers	Right Ventricle	heart
14	chr9:71031600-71032200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:71031800-71032200	Strong transcription	Stomach Smooth Muscle	stomach
16	chr9:71031800-71032800	Genic enhancers	Colon Smooth Muscle	Colon
17	chr9:71031800-71032800	Strong transcription	Fetal Stomach	stomach
18	chr9:71031800-71033800	Genic enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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