Variant report

Variant	rs11142075
Chromosome Location	chr9:71033836-71033837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10116868	0.86[JPT][hapmap]
rs10511958	0.86[JPT][hapmap]
rs10735596	0.81[JPT][hapmap]
rs10780962	0.86[JPT][hapmap]
rs10780963	0.86[JPT][hapmap]
rs10780967	0.82[JPT][hapmap]
rs10868795	0.81[JPT][hapmap]
rs10868796	0.81[JPT][hapmap]
rs10868804	0.81[JPT][hapmap]
rs10868851	0.86[JPT][hapmap];1.00[MEX][hapmap]
rs10868852	0.86[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10868877	0.86[JPT][hapmap]
rs10868879	0.85[JPT][hapmap]
rs11141314	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11141421	0.81[AMR][1000 genomes]
rs11141422	0.81[AMR][1000 genomes]
rs11141457	0.81[AMR][1000 genomes]
rs11141466	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs11141556	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11141675	0.81[AMR][1000 genomes]
rs11141888	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11141974	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11141997	0.88[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11142179	0.87[JPT][hapmap]
rs11142199	0.81[JPT][hapmap]
rs11142305	0.81[JPT][hapmap]
rs11142549	0.86[JPT][hapmap]
rs12000789	0.86[JPT][hapmap]
rs12353500	0.91[JPT][hapmap]
rs1353009	0.86[JPT][hapmap]
rs1492823	0.81[JPT][hapmap]
rs1492824	0.81[JPT][hapmap]
rs17056009	0.91[JPT][hapmap];0.90[AMR][1000 genomes]
rs1887889	0.81[JPT][hapmap]
rs2026033	0.81[JPT][hapmap]
rs2026034	0.81[JPT][hapmap]
rs4237245	0.81[JPT][hapmap]
rs4744594	0.91[JPT][hapmap]
rs4745041	0.82[JPT][hapmap]
rs624149	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs6560144	0.86[JPT][hapmap]
rs7020465	0.81[JPT][hapmap]
rs7025140	0.81[JPT][hapmap]
rs7039149	0.82[JPT][hapmap]
rs7039686	0.86[JPT][hapmap]
rs7042123	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
2	chr9:71027600-71041800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:71031000-71035600	Enhancers	Fetal Heart	heart
4	chr9:71031200-71035200	Enhancers	Right Ventricle	heart
5	chr9:71032000-71034800	Enhancers	Left Ventricle	heart
6	chr9:71032000-71035400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:71032000-71035800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr9:71032200-71034800	Weak transcription	Right Atrium	heart
9	chr9:71032800-71034000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:71032800-71036000	Enhancers	Colon Smooth Muscle	Colon
11	chr9:71033000-71041800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:71033200-71034200	Weak transcription	Fetal Stomach	stomach
13	chr9:71033600-71034600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:71033600-71038600	Weak transcription	Aorta	Aorta
15	chr9:71033800-71034400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:71033800-71035800	Enhancers	Stomach Smooth Muscle	stomach
17	chr9:71033800-71040200	Weak transcription	Fetal Lung	lung
18	chr9:71033800-71041600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:71033800-71041600	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:71033800-71041800	Weak transcription	Psoas Muscle	Psoas

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