Variant report

Variant	rs11142305
Chromosome Location	chr9:71037776-71037777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511958	0.86[JPT][hapmap]
rs10735596	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780922	0.82[JPT][hapmap]
rs10780935	0.82[JPT][hapmap]
rs10780967	0.82[JPT][hapmap]
rs10868795	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10868796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10868803	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10868804	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10868851	0.86[JPT][hapmap]
rs10868852	0.86[JPT][hapmap]
rs10868877	0.86[JPT][hapmap]
rs11142075	0.81[JPT][hapmap]
rs11142179	0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142199	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11142334	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11142335	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12353500	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1353009	0.86[JPT][hapmap]
rs1492822	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1492823	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1492824	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17056009	0.87[JPT][hapmap]
rs1887889	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1976232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026033	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2026034	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744594	0.83[JPT][hapmap]
rs4745041	0.82[JPT][hapmap]
rs7020465	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7025140	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7029177	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
2	chr9:71027600-71041800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:71033000-71041800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:71033600-71038600	Weak transcription	Aorta	Aorta
5	chr9:71033800-71040200	Weak transcription	Fetal Lung	lung
6	chr9:71033800-71041600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:71033800-71041600	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:71033800-71041800	Weak transcription	Psoas Muscle	Psoas
9	chr9:71035200-71038800	Weak transcription	Right Ventricle	heart
10	chr9:71035200-71040000	Weak transcription	Fetal Stomach	stomach
11	chr9:71035200-71040000	Weak transcription	Right Atrium	heart
12	chr9:71035200-71041600	Weak transcription	Left Ventricle	heart
13	chr9:71035400-71038600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:71035400-71041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:71035800-71038400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:71035800-71042000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:71036000-71038400	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:71036400-71041400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links