Variant report

Variant	rs11142391
Chromosome Location	chr9:71052762-71052763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1041290	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511958	0.91[GIH][hapmap]
rs10780955	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10780960	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10780967	1.00[GIH][hapmap]
rs10781002	0.90[GIH][hapmap]
rs10868817	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10868826	0.95[ASN][1000 genomes]
rs10868851	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10868852	1.00[GIH][hapmap]
rs10868877	1.00[GIH][hapmap]
rs11142393	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142449	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142461	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142468	0.95[EUR][1000 genomes]
rs11142499	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11142500	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11142616	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12238439	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12353500	0.91[GIH][hapmap]
rs13439981	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs1353009	0.91[GIH][hapmap]
rs1353010	1.00[JPT][hapmap]
rs17056009	0.90[EUR][1000 genomes]
rs265083	0.81[GIH][hapmap]
rs4745041	0.91[GIH][hapmap]
rs59478866	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019238	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7021955	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs72714318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7855134	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs7875408	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs984109	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71043600-71052800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:71045600-71061400	Weak transcription	NHLF	lung
3	chr9:71047600-71053800	Enhancers	Rectal Smooth Muscle	rectum
4	chr9:71049800-71054000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:71050800-71053000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:71050800-71053000	Enhancers	Fetal Heart	heart
7	chr9:71050800-71053600	Enhancers	Colon Smooth Muscle	Colon
8	chr9:71051200-71062000	Weak transcription	Left Ventricle	heart
9	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
10	chr9:71051400-71052800	Enhancers	Fetal Lung	lung
11	chr9:71051400-71053000	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:71051400-71053600	Weak transcription	Aorta	Aorta
13	chr9:71051600-71066600	Weak transcription	Right Ventricle	heart
14	chr9:71051800-71052800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:71051800-71053000	Enhancers	Fetal Stomach	stomach
16	chr9:71052200-71052800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr9:71052200-71053000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:71052200-71053000	Enhancers	Ovary	ovary
19	chr9:71052400-71052800	Enhancers	Fetal Brain Male	brain
20	chr9:71052400-71053000	Enhancers	Right Atrium	heart
21	chr9:71052600-71052800	Enhancers	HSMMtube	muscle

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