Variant report

Variant	rs11142393
Chromosome Location	chr9:71053192-71053193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1041290	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868817	0.87[ASN][1000 genomes]
rs10868826	0.85[ASN][1000 genomes]
rs10868851	0.95[EUR][1000 genomes]
rs11142391	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142449	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142461	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142468	0.95[EUR][1000 genomes]
rs17056009	0.90[EUR][1000 genomes]
rs59478866	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72714318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7875408	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71045600-71061400	Weak transcription	NHLF	lung
2	chr9:71047600-71053800	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:71049800-71054000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:71050800-71053600	Enhancers	Colon Smooth Muscle	Colon
5	chr9:71051200-71062000	Weak transcription	Left Ventricle	heart
6	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
7	chr9:71051400-71053600	Weak transcription	Aorta	Aorta
8	chr9:71051600-71066600	Weak transcription	Right Ventricle	heart
9	chr9:71053000-71053400	Weak transcription	Right Atrium	heart
10	chr9:71053000-71058200	Weak transcription	Fetal Stomach	stomach
11	chr9:71053000-71058200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:71053000-71061400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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