Variant report

Variant	rs11142461
Chromosome Location	chr9:71059889-71059890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1041290	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10511958	0.91[GIH][hapmap]
rs10780955	1.00[JPT][hapmap]
rs10780960	1.00[JPT][hapmap]
rs10780967	1.00[GIH][hapmap]
rs10781002	0.90[GIH][hapmap]
rs10868817	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10868826	0.88[CHB][hapmap];0.98[ASN][1000 genomes]
rs10868851	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10868852	1.00[GIH][hapmap]
rs10868877	1.00[GIH][hapmap]
rs11142391	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142393	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142449	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142468	0.95[EUR][1000 genomes]
rs11142499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11142500	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11142616	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12238439	0.88[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs12353500	0.91[GIH][hapmap]
rs13439981	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs1353009	0.91[GIH][hapmap]
rs1353010	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17056009	0.90[EUR][1000 genomes]
rs265083	0.81[GIH][hapmap]
rs4745041	0.91[GIH][hapmap]
rs59478866	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7019238	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7021955	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs72714318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855134	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs7875408	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs984109	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71045600-71061400	Weak transcription	NHLF	lung
2	chr9:71051200-71062000	Weak transcription	Left Ventricle	heart
3	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
4	chr9:71051600-71066600	Weak transcription	Right Ventricle	heart
5	chr9:71053000-71061400	Weak transcription	Fetal Heart	heart
6	chr9:71057800-71060000	Enhancers	Fetal Lung	lung
7	chr9:71058000-71062000	Enhancers	Colon Smooth Muscle	Colon
8	chr9:71058200-71063800	Enhancers	Fetal Stomach	stomach
9	chr9:71058200-71068000	Enhancers	Rectal Smooth Muscle	rectum
10	chr9:71059000-71060400	Weak transcription	Right Atrium	heart
11	chr9:71059200-71061800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:71059400-71060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:71059600-71060000	Weak transcription	Stomach Smooth Muscle	stomach

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