Variant report

Variant	rs11142543
Chromosome Location	chr9:71080845-71080846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116868	0.99[ASN][1000 genomes]
rs10511957	0.87[EUR][1000 genomes]
rs10511958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10780960	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10780962	0.93[ASN][1000 genomes]
rs10780963	0.96[ASN][1000 genomes]
rs10780967	0.89[ASN][1000 genomes]
rs10868851	0.90[ASN][1000 genomes]
rs10868852	0.90[ASN][1000 genomes]
rs10868876	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10868877	0.93[ASN][1000 genomes]
rs10868879	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10868913	0.81[EUR][1000 genomes]
rs11142468	0.88[ASN][1000 genomes]
rs11142541	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11142549	0.93[ASN][1000 genomes]
rs11789244	0.88[EUR][1000 genomes]
rs11792137	0.97[EUR][1000 genomes]
rs11794424	0.87[EUR][1000 genomes]
rs12000789	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12353500	0.90[ASN][1000 genomes]
rs1353009	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1353010	0.97[EUR][1000 genomes]
rs17053702	0.87[EUR][1000 genomes]
rs17054803	0.87[EUR][1000 genomes]
rs17056009	0.86[ASN][1000 genomes]
rs17059173	0.87[EUR][1000 genomes]
rs265087	0.85[EUR][1000 genomes]
rs35011246	0.94[ASN][1000 genomes]
rs4237244	0.89[ASN][1000 genomes]
rs4237245	0.89[ASN][1000 genomes]
rs4744594	0.87[ASN][1000 genomes]
rs4745041	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4745083	0.88[EUR][1000 genomes]
rs6560144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7022394	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7026163	0.96[ASN][1000 genomes]
rs7030076	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7031619	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7035038	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7039149	0.89[ASN][1000 genomes]
rs7039686	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7042123	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7042601	0.87[ASN][1000 genomes]
rs7042721	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7855134	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7860270	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71070200-71087000	Weak transcription	Aorta	Aorta
3	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:71077400-71087000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:71077600-71098800	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:71077800-71081200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
10	chr9:71078200-71084400	Weak transcription	Fetal Heart	heart
11	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
12	chr9:71078400-71081600	Strong transcription	Colon Smooth Muscle	Colon
13	chr9:71078400-71082000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:71078400-71084400	Weak transcription	Ovary	ovary
15	chr9:71078400-71087000	Weak transcription	Fetal Stomach	stomach
16	chr9:71079400-71081200	Strong transcription	Stomach Smooth Muscle	stomach
17	chr9:71080000-71081000	Strong transcription	Fetal Kidney	kidney
18	chr9:71080000-71082000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:71080200-71082000	Strong transcription	Fetal Lung	lung
20	chr9:71080200-71085600	Weak transcription	Right Atrium	heart
21	chr9:71080600-71081800	Weak transcription	Left Ventricle	heart
22	chr9:71080600-71082200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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