Variant report

Variant	rs1114308
Chromosome Location	chr13:96659488-96659489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1015068	0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11070154	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11070157	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11619333	0.83[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11619490	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11841021	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11842755	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11843772	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12583522	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12585387	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12858210	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12860877	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12876018	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs1411557	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1537030	0.81[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap]
rs1537031	0.83[AMR][1000 genomes]
rs1540609	0.83[EUR][1000 genomes]
rs17189951	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813179	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1854173	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1872161	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026818	0.86[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs2026819	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062276	0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129004	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2129005	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2170812	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2277419	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2389532	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs2389570	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2389571	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28649586	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34816227	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35685996	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35836619	0.93[ASW][hapmap];0.81[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap]
rs35898412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36079088	0.83[AMR][1000 genomes]
rs3759441	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3759442	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3782989	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3782990	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3825424	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4547218	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4771923	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773928	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs4773933	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4773934	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4773935	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55822301	0.80[AMR][1000 genomes]
rs59592654	0.80[AMR][1000 genomes]
rs60677558	0.80[AMR][1000 genomes]
rs61972920	0.82[AMR][1000 genomes]
rs61973963	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6492824	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs6492825	0.82[AMR][1000 genomes]
rs6492827	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6492828	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6492829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7317285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7320351	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7323150	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7324957	0.81[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7325690	0.82[AMR][1000 genomes]
rs7325915	0.88[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7327532	0.90[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7328164	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7328703	0.81[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes]
rs7331461	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7331926	0.82[AMR][1000 genomes]
rs7332683	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7333370	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7334100	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7334508	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7335514	0.82[AMR][1000 genomes]
rs7335872	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7336088	0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7336373	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7336483	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7337653	0.81[AMR][1000 genomes]
rs7338224	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7338859	0.83[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap]
rs764714	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7981923	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7982337	0.81[AMR][1000 genomes]
rs7983589	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7983843	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7986005	0.81[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7990833	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7991250	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7991413	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7992875	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7998353	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556503	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9556504	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs9556509	0.80[AMR][1000 genomes]
rs9556511	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9556512	0.88[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9556513	0.81[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9556515	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9556516	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9556517	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556518	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556520	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556521	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9556523	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561964	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9561967	0.87[ASW][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap]
rs9561969	0.90[CHB][hapmap];0.87[JPT][hapmap];0.80[LWK][hapmap];0.85[MKK][hapmap]
rs9561973	0.81[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap]
rs9561975	0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap]
rs9561984	0.83[AMR][1000 genomes]
rs9561985	0.82[AMR][1000 genomes]
rs9561987	0.80[AMR][1000 genomes]
rs9561988	0.83[AMR][1000 genomes]
rs9561991	0.84[AMR][1000 genomes]
rs9561995	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9561996	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561998	0.88[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9562003	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9562005	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9562006	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9562007	0.81[ASN][1000 genomes]
rs9562008	0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs9562012	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9562014	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9562015	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9562016	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9562017	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9562018	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9562019	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9562025	0.83[EUR][1000 genomes]
rs9562027	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9562032	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9634487	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9670470	0.88[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1114308	DNAJC3	cis	Esophagus Muscularis	GTEx
rs1114308	CLDN10	cis	cerebellum	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96612200-96668600	Weak transcription	Pancreas	Pancrea
2	chr13:96613200-96694200	Weak transcription	A549	lung
3	chr13:96613600-96663600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:96616200-96668600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:96616800-96668400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:96617000-96663200	Weak transcription	NHDF-Ad	bronchial
7	chr13:96621600-96668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:96622000-96668600	Weak transcription	Aorta	Aorta
9	chr13:96622200-96660400	Weak transcription	Ovary	ovary
10	chr13:96622200-96668600	Weak transcription	Fetal Kidney	kidney
11	chr13:96622200-96671400	Weak transcription	Hela-S3	cervix
12	chr13:96622200-96677200	Weak transcription	NH-A	brain
13	chr13:96622400-96668200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:96623600-96668200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr13:96630200-96660400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:96634800-96668200	Weak transcription	Fetal Stomach	stomach
17	chr13:96647600-96668200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr13:96648000-96668200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:96648200-96668000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:96651000-96671800	Weak transcription	HSMM	muscle
21	chr13:96652600-96668400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:96652800-96668000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:96654600-96660000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr13:96655400-96668400	Weak transcription	Fetal Brain Male	brain
25	chr13:96655600-96668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:96656000-96668000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr13:96656000-96668000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr13:96656000-96668200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr13:96656000-96668200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr13:96656200-96660000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr13:96656400-96660000	Weak transcription	Liver	Liver
32	chr13:96657600-96668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr13:96657800-96668200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr13:96657800-96677200	Weak transcription	HSMMtube	muscle
35	chr13:96658400-96668600	Weak transcription	Left Ventricle	heart
36	chr13:96658400-96668600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr13:96658600-96661400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
38	chr13:96658600-96665000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:96659000-96660200	ZNF genes & repeats	Fetal Lung	lung
40	chr13:96659000-96660400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:96659200-96659600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:96659200-96660200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr13:96659200-96660800	ZNF genes & repeats	Psoas Muscle	Psoas
44	chr13:96659200-96661000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr13:96659200-96668200	Weak transcription	Brain Germinal Matrix	brain
46	chr13:96659400-96668200	Weak transcription	Fetal Intestine Large	intestine
47	chr13:96659400-96672600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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