Variant report

Variant	rs11145076
Chromosome Location	chr9:79419237-79419238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10869818	0.81[ASN][1000 genomes]
rs10869827	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10869833	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10869835	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11145080	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11145085	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12353019	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12376845	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343394	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1539613	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1936292	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744812	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7022561	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7046472	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72732653	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7854027	0.81[ASN][1000 genomes]
rs7861202	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7867564	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758190	chr9:79365865-79673907	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759697	chr9:79365865-79673907	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79393600-79423400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:79400400-79423600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:79400800-79419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:79404400-79419400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:79410400-79423600	Weak transcription	Brain Substantia Nigra	brain
6	chr9:79411600-79421200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:79413400-79431800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:79414000-79425600	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:79414000-79432200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:79414200-79419400	Weak transcription	HSMM	muscle
11	chr9:79416200-79423400	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:79417000-79420000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:79417200-79419800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:79417400-79419600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:79417600-79419800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:79417800-79419400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr9:79417800-79419400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:79418400-79419600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:79418400-79451000	Weak transcription	Fetal Stomach	stomach
20	chr9:79418600-79420400	Strong transcription	Aorta	Aorta
21	chr9:79418600-79422200	Strong transcription	HSMMtube	muscle
22	chr9:79418800-79419400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:79418800-79419600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:79418800-79419800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:79419000-79421400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr9:79419200-79421000	Strong transcription	Stomach Smooth Muscle	stomach

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