Variant report

Variant	rs11150250
Chromosome Location	chr16:80206098-80206099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80205800..80207401-chr16:80243616..80246566,2	MCF-7	breast:
2	chr16:80201693..80203729-chr16:80204153..80206753,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11642380	0.82[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs11642712	0.82[CHB][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs11646831	0.99[ASN][1000 genomes]
rs11647537	0.93[AFR][1000 genomes]
rs11648337	0.90[AFR][1000 genomes]
rs11649346	0.90[AFR][1000 genomes]
rs11859592	0.90[AFR][1000 genomes]
rs11866127	0.83[AFR][1000 genomes]
rs12926031	0.92[AFR][1000 genomes]
rs12926639	0.90[AFR][1000 genomes]
rs12927541	0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12927726	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12927869	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12928265	0.89[AFR][1000 genomes]
rs12928708	0.94[AFR][1000 genomes]
rs12930060	0.88[ASN][1000 genomes]
rs1478504	0.82[AFR][1000 genomes]
rs16944269	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17727704	0.85[AFR][1000 genomes]
rs17734652	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17796688	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1904184	0.90[AFR][1000 genomes]
rs2008481	0.85[AFR][1000 genomes]
rs2061792	0.88[AFR][1000 genomes]
rs34149818	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34758462	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4300652	0.93[AFR][1000 genomes]
rs4405565	0.88[AFR][1000 genomes]
rs62049508	0.90[EUR][1000 genomes]
rs7191912	0.92[AFR][1000 genomes]
rs7193739	0.86[AFR][1000 genomes]
rs8046518	0.90[AFR][1000 genomes]
rs8060663	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9935498	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80193600-80207600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr16:80199600-80207800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80202400-80207800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:80202400-80207800	Weak transcription	HSMM	muscle

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