Variant report

Variant	rs11150269
Chromosome Location	chr16:80335253-80335254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80334401..80335928-chr16:80343154..80345608,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11647321	0.82[ASN][1000 genomes]
rs11648820	0.82[ASN][1000 genomes]
rs12600307	0.88[ASN][1000 genomes]
rs12918117	0.80[ASN][1000 genomes]
rs12922310	0.80[ASN][1000 genomes]
rs12922572	0.80[ASN][1000 genomes]
rs12935352	0.80[ASN][1000 genomes]
rs16952758	0.80[ASN][1000 genomes]
rs2139107	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1063466	chr16:80227628-80360463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv573295	chr16:80251265-80341115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv949197	chr16:80284557-80456403	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1064628	chr16:80286004-80406177	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv542986	chr16:80286004-80406177	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2762333	chr16:80307755-80509983	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv573296	chr16:80315263-80338877	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1056026	chr16:80317627-80471469	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv542987	chr16:80317627-80471469	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv906998	chr16:80320056-80371102	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80332200-80335400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr16:80332200-80335600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80332200-80335800	Enhancers	HSMM	muscle
4	chr16:80332200-80336000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:80332600-80335600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:80332600-80335800	Enhancers	A549	lung
7	chr16:80332800-80336000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:80333000-80340200	Weak transcription	Fetal Kidney	kidney
9	chr16:80333400-80335600	Enhancers	NH-A	brain
10	chr16:80333400-80340400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr16:80334000-80335600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr16:80334200-80336000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:80334400-80337600	Weak transcription	Fetal Stomach	stomach
14	chr16:80334600-80335600	Weak transcription	Pancreas	Pancrea
15	chr16:80334600-80335600	Weak transcription	NHLF	lung
16	chr16:80334600-80335800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:80334600-80337200	Weak transcription	Fetal Lung	lung
18	chr16:80334600-80337200	Weak transcription	Fetal Muscle Leg	muscle
19	chr16:80334800-80335600	Weak transcription	Aorta	Aorta
20	chr16:80335000-80336000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr16:80335000-80336000	Weak transcription	NHDF-Ad	bronchial
22	chr16:80335000-80337800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:80335000-80339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr16:80335200-80336200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr16:80335200-80337600	Weak transcription	HSMMtube	muscle
26	chr16:80335200-80337600	Weak transcription	Osteobl	bone
27	chr16:80335200-80338000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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