Variant report

Variant	rs11150338
Chromosome Location	chr16:81070979-81070980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:81068857-81071180	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr16:81070509-81071095	K562	blood:	n/a	n/a
3	MAFK	chr16:81070729-81071001	HepG2	liver:	n/a	n/a
4	TEAD4	chr16:81070171-81071061	K562	blood:	n/a	n/a
5	CEBPB	chr16:81070008-81071044	K562	blood:	n/a	chr16:81070188-81070199 chr16:81070187-81070198
6	MXI1	chr16:81068735-81071186	SK-N-SH	brain:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81068890..81071040-chr16:81770218..81773249,4	MCF-7	breast:
2	chr16:81067084..81072191-chr16:81106033..81112629,21	MCF-7	breast:
3	chr16:81061882..81066764-chr16:81067446..81071538,9	MCF-7	breast:
4	chr16:81067728..81071580-chr16:81109086..81113987,13	K562	blood:
5	chr16:81070898..81072766-chr16:81109747..81111312,2	MCF-7	breast:
6	chr16:81069395..81071569-chr16:81120451..81122846,2	K562	blood:
7	chr16:81066967..81071215-chr16:81128766..81132498,3	MCF-7	breast:
8	chr16:81068207..81071925-chr16:81073357..81079831,13	MCF-7	breast:
9	chr16:81056423..81058180-chr16:81069392..81072113,2	MCF-7	breast:
10	chr16:81037151..81042784-chr16:81066438..81073797,14	K562	blood:
11	chr16:81037996..81043724-chr16:81066407..81071400,11	MCF-7	breast:
12	chr16:81067878..81071089-chr16:81109086..81112093,6	K562	blood:
13	chr16:81068173..81071730-chr16:81126382..81131671,6	MCF-7	breast:

No data

Variant related genes	Relation type
ATMIN	TF binding region
ENSG00000260213	TF binding region
ENSG00000166454	Chromatin interaction
ENSG00000261061	Chromatin interaction
ENSG00000197943	Chromatin interaction
ENSG00000261218	Chromatin interaction
ENSG00000140905	Chromatin interaction
ENSG00000103121	Chromatin interaction
ENSG00000166451	Chromatin interaction
ENSG00000245059	Chromatin interaction
ENSG00000260213	Chromatin interaction
ENSG00000260643	Chromatin interaction
ENSG00000166455	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1035541	0.85[ASN][1000 genomes]
rs10459871	0.85[ASN][1000 genomes]
rs10459872	0.85[ASN][1000 genomes]
rs10514512	0.81[ASN][1000 genomes]
rs11537	0.87[ASN][1000 genomes]
rs12443549	0.82[ASN][1000 genomes]
rs12444137	0.82[ASN][1000 genomes]
rs12444969	0.87[ASN][1000 genomes]
rs2278022	0.88[ASN][1000 genomes]
rs2278024	0.88[ASN][1000 genomes]
rs2287995	0.85[ASN][1000 genomes]
rs3784815	1.00[EUR][1000 genomes]
rs3826049	1.00[EUR][1000 genomes]
rs55939311	0.82[ASN][1000 genomes]
rs56166222	0.83[ASN][1000 genomes]
rs58144189	0.85[ASN][1000 genomes]
rs60481447	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62054594	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73597259	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73597265	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs754429	0.85[ASN][1000 genomes]
rs8044914	0.83[EUR][1000 genomes]
rs8049509	0.83[EUR][1000 genomes]
rs8050906	0.83[EUR][1000 genomes]
rs8053975	0.83[EUR][1000 genomes]
rs8059621	0.83[EUR][1000 genomes]
rs8177843	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8177942	0.81[ASN][1000 genomes]
rs9806918	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1065258	chr16:80887483-81081768	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1064164	chr16:80918138-81126967	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv542991	chr16:80918138-81126967	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
6	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv573338	chr16:81020393-81106944	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv995083	chr16:81050917-81076406	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv1897	chr16:81060566-81105260	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
12	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	esv3374530	chr16:81068676-81071224	Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81068800-81071200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr16:81069200-81071000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr16:81069200-81071000	Active TSS	Colonic Mucosa	Colon
4	chr16:81069400-81071000	Active TSS	Right Ventricle	heart
5	chr16:81069600-81071000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr16:81069600-81071200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:81070000-81071000	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr16:81070000-81071000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr16:81070000-81071200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr16:81070200-81071000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr16:81070200-81071000	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr16:81070200-81071000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr16:81070200-81071000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr16:81070200-81071000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr16:81070200-81071000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr16:81070200-81071000	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr16:81070200-81071000	Flanking Active TSS	Fetal Muscle Leg	muscle
18	chr16:81070200-81071000	Flanking Active TSS	Rectal Smooth Muscle	rectum
19	chr16:81070200-81071000	Flanking Active TSS	HUVEC	blood vessel
20	chr16:81070200-81071000	Flanking Active TSS	NHDF-Ad	bronchial
21	chr16:81070200-81071000	Flanking Active TSS	Osteobl	bone
22	chr16:81070200-81071200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr16:81070200-81071200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr16:81070200-81071200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:81070200-81071200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:81070200-81071200	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr16:81070200-81071200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr16:81070200-81071200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr16:81070200-81071200	Flanking Active TSS	Dnd41	blood
30	chr16:81070200-81071200	Flanking Active TSS	GM12878-XiMat	blood
31	chr16:81070200-81071200	Flanking Active TSS	Hela-S3	cervix
32	chr16:81070200-81071200	Flanking Active TSS	NH-A	brain
33	chr16:81070200-81071200	Flanking Active TSS	NHEK	skin
34	chr16:81070400-81071000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr16:81070400-81071000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr16:81070400-81071000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr16:81070400-81071000	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr16:81070400-81071000	Flanking Active TSS	Fetal Kidney	kidney
39	chr16:81070400-81071000	Flanking Active TSS	Ovary	ovary
40	chr16:81070400-81071000	Flanking Active TSS	HMEC	breast
41	chr16:81070400-81071200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr16:81070400-81071200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr16:81070400-81071200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr16:81070400-81071200	Enhancers	Primary B cells from peripheral blood	blood
45	chr16:81070400-81071200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr16:81070400-81071200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr16:81070400-81071200	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr16:81070400-81071200	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr16:81070400-81071200	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr16:81070400-81071200	Flanking Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links