Variant report

Variant	rs11155070
Chromosome Location	chr6:139806484-139806485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139805921..139807747-chr6:139809317..139811941,2	K562	blood:
2	chr6:139799661..139802615-chr6:139804179..139806515,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10872516	0.81[AMR][1000 genomes]
rs1468708	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1468709	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3010286	0.94[JPT][hapmap];0.92[YRI][hapmap];0.88[ASN][1000 genomes]
rs3010288	0.91[ASN][1000 genomes]
rs4896461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896463	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896464	0.80[AMR][1000 genomes]
rs6570344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6907607	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6916887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926031	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770257	0.81[AMR][1000 genomes]
rs9376420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376421	0.81[AMR][1000 genomes]
rs9376422	0.81[AMR][1000 genomes]
rs9376423	0.81[AMR][1000 genomes]
rs9389689	0.83[AMR][1000 genomes]
rs9399281	0.93[YRI][hapmap]
rs9399282	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403080	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403082	0.81[AMR][1000 genomes]
rs9403083	0.81[AMR][1000 genomes]
rs9403084	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs9495502	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139796800-139806600	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:139797000-139806800	Weak transcription	Fetal Lung	lung
3	chr6:139802400-139807400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:139803800-139806600	Weak transcription	Fetal Heart	heart
5	chr6:139803800-139807400	Weak transcription	Ovary	ovary
6	chr6:139804000-139806600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:139804000-139807000	Weak transcription	Fetal Kidney	kidney
8	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:139804400-139806600	Weak transcription	Fetal Stomach	stomach
10	chr6:139804600-139810800	Weak transcription	K562	blood
11	chr6:139805200-139807400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:139806400-139807200	Enhancers	Liver	Liver
13	chr6:139806400-139807800	Enhancers	HepG2	liver

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