Variant report

Variant	rs11155648
Chromosome Location	chr6:101212706-101212707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101209793..101211666-chr6:101212559..101214654,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10485292	0.95[EUR][1000 genomes]
rs11155631	0.95[EUR][1000 genomes]
rs12200293	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12201157	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12216426	0.94[EUR][1000 genomes]
rs12665593	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17672990	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020692	chr6:101136992-101426071	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv604275	chr6:101158950-101277926	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv886457	chr6:101158950-101487473	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1016353	chr6:101172705-101304041	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1024526	chr6:101192726-101241291	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101182200-101214400	Weak transcription	A549	lung
2	chr6:101184400-101304600	Weak transcription	Hela-S3	cervix
3	chr6:101190800-101216200	Weak transcription	Stomach Mucosa	stomach
4	chr6:101190800-101217400	Weak transcription	NHLF	lung
5	chr6:101191400-101213000	Weak transcription	HMEC	breast
6	chr6:101191400-101217600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:101191400-101277000	Weak transcription	Esophagus	oesophagus
8	chr6:101202800-101215400	Weak transcription	Colonic Mucosa	Colon
9	chr6:101204800-101215200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:101205600-101215200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:101206200-101215400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:101206400-101215200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:101206600-101213600	Weak transcription	Fetal Kidney	kidney
14	chr6:101207200-101215200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr6:101207600-101217000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:101208200-101215200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:101208200-101215400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:101208400-101213800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:101208400-101221400	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:101208600-101213800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr6:101209400-101216600	Weak transcription	Lung	lung
22	chr6:101209600-101214200	Weak transcription	Right Ventricle	heart
23	chr6:101210600-101212800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:101210600-101213600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:101210600-101214600	ZNF genes & repeats	GM12878-XiMat	blood
26	chr6:101210800-101215400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:101211000-101213200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr6:101211000-101213600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
29	chr6:101211000-101213600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:101211000-101214200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:101211000-101214400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:101211000-101214600	Strong transcription	Fetal Intestine Large	intestine
33	chr6:101211000-101215200	ZNF genes & repeats	Dnd41	blood
34	chr6:101211000-101215400	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:101211000-101215400	Strong transcription	NH-A	brain
36	chr6:101211200-101212800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr6:101211200-101213200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:101211200-101213200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
39	chr6:101211200-101213400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
40	chr6:101211200-101213600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr6:101211200-101213600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:101211200-101213600	ZNF genes & repeats	Fetal Lung	lung
43	chr6:101211200-101214800	Weak transcription	Fetal Heart	heart
44	chr6:101211200-101214800	Strong transcription	Left Ventricle	heart
45	chr6:101211200-101215200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:101211200-101215200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:101211200-101215200	Strong transcription	Osteobl	bone
48	chr6:101211400-101212800	Strong transcription	Rectal Smooth Muscle	rectum
49	chr6:101211400-101213200	Strong transcription	Thymus	Thymus
50	chr6:101211400-101213600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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