Variant report

Variant	rs1115721
Chromosome Location	chr4:100636286-100636287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1027223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516455	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722443	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11727560	0.85[AMR][1000 genomes]
rs11729858	0.83[CHB][hapmap]
rs11730739	0.90[ASN][1000 genomes]
rs11936303	0.97[ASN][1000 genomes]
rs12639747	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs12640222	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642668	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12643245	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12648843	0.94[ASN][1000 genomes]
rs13103880	0.81[ASN][1000 genomes]
rs13111133	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13111603	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13112253	0.89[CHB][hapmap];0.93[CHD][hapmap];0.90[ASN][1000 genomes]
rs13114983	0.83[ASN][1000 genomes]
rs13118288	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13123629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13123690	0.90[ASN][1000 genomes]
rs13124255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13130068	0.97[ASN][1000 genomes]
rs13131135	1.00[CEU][hapmap]
rs13150247	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1352775	0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs1388295	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1426734	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1491234	0.85[JPT][hapmap]
rs1491240	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs1582793	0.88[ASN][1000 genomes]
rs1586756	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1586757	0.99[ASN][1000 genomes]
rs17029269	0.83[ASN][1000 genomes]
rs17029387	0.95[ASN][1000 genomes]
rs17029575	1.00[CEU][hapmap]
rs1816197	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1834659	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1948353	0.97[ASN][1000 genomes]
rs2306986	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2866167	0.96[ASN][1000 genomes]
rs35215295	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36098323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3792683	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4699758	1.00[CEU][hapmap]
rs61705069	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs66931934	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6831328	0.97[ASN][1000 genomes]
rs6832692	0.97[ASN][1000 genomes]
rs6840719	0.95[ASN][1000 genomes]
rs6846293	0.83[CHB][hapmap]
rs71614607	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670607	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[ASN][1000 genomes]
rs7675468	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7677594	0.96[ASN][1000 genomes]
rs7678142	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7678889	0.93[ASN][1000 genomes]
rs7688255	0.87[ASN][1000 genomes]
rs7691498	0.86[ASN][1000 genomes]
rs884276	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs958868	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100631800-100636400	Weak transcription	Left Ventricle	heart
2	chr4:100632800-100637600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:100633000-100638200	Weak transcription	Hela-S3	cervix
4	chr4:100633600-100636400	Weak transcription	HMEC	breast
5	chr4:100633800-100636400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:100633800-100636400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:100635600-100638200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:100635800-100637400	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:100635800-100638800	Enhancers	Fetal Intestine Large	intestine
10	chr4:100635800-100638800	Enhancers	Fetal Intestine Small	intestine
11	chr4:100636000-100636600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:100636000-100636600	Enhancers	Adipose Nuclei	Adipose
13	chr4:100636000-100636800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:100636000-100636800	Enhancers	Colon Smooth Muscle	Colon
15	chr4:100636000-100638000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:100636000-100638600	Enhancers	Psoas Muscle	Psoas
17	chr4:100636200-100636600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:100636200-100637000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:100636200-100637200	Enhancers	NHEK	skin
20	chr4:100636200-100637400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:100636200-100638400	Enhancers	Duodenum Mucosa	Duodenum

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