The 2.0 version of rSNPBase

Variant report

Variant rs11161596
Chromosome Location chr1:85776894-85776895
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85772800-85779800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:85774000-85779600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr1:85774400-85777800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr1:85774400-85778000 Weak transcription HMEC breast
5 chr1:85774400-85779400 Weak transcription Aorta Aorta
6 chr1:85774600-85777400 Weak transcription HSMMtube muscle
7 chr1:85774600-85777400 Weak transcription NHLF lung
8 chr1:85774600-85777600 Weak transcription H1 Cell Line embryonic stem cell
9 chr1:85774600-85777600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:85774600-85777600 Weak transcription Right Ventricle heart
11 chr1:85774600-85777800 Weak transcription H9 Cell Line embryonic stem cell
12 chr1:85774600-85777800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:85774600-85779000 Weak transcription Fetal Heart heart
14 chr1:85774600-85779000 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:85774600-85779400 Weak transcription Colon Smooth Muscle Colon
16 chr1:85774600-85779600 Weak transcription Fetal Lung lung
17 chr1:85774600-85779600 Weak transcription Ovary ovary
18 chr1:85774600-85779800 Weak transcription Placenta Placenta
19 chr1:85774600-85779800 Weak transcription Right Atrium heart
20 chr1:85774600-85780000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:85774600-85780000 Weak transcription Lung lung
22 chr1:85774600-85780000 Weak transcription Pancreas Pancrea
23 chr1:85774600-85780000 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:85774600-85780000 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr1:85774600-85782400 Weak transcription Fetal Intestine Small intestine
26 chr1:85774600-85785200 Weak transcription Liver Liver
27 chr1:85774600-85785800 Weak transcription Fetal Intestine Large intestine
28 chr1:85774600-85787000 Weak transcription Fetal Stomach stomach
29 chr1:85774600-85794800 Weak transcription Spleen Spleen
30 chr1:85774800-85777400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:85774800-85777400 Weak transcription Muscle Satellite Cultured Cells --
32 chr1:85774800-85777600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:85774800-85777600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:85774800-85777600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:85774800-85777600 Weak transcription Fetal Brain Female brain
36 chr1:85774800-85777600 Weak transcription NHDF-Ad bronchial
37 chr1:85774800-85777800 Weak transcription Fetal Muscle Leg muscle
38 chr1:85774800-85777800 Weak transcription Psoas Muscle Psoas
39 chr1:85774800-85777800 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr1:85774800-85779000 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr1:85774800-85779600 Weak transcription ES-WA7 Cell Line embryonic stem cell
42 chr1:85774800-85782200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:85774800-85782200 Weak transcription Duodenum Mucosa Duodenum
44 chr1:85774800-85784000 Weak transcription HepG2 liver
45 chr1:85774800-85790400 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr1:85774800-85790600 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:85774800-85794200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:85775000-85777600 Weak transcription HSMM muscle
49 chr1:85775000-85777600 Weak transcription NH-A brain
50 chr1:85775000-85777800 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015