Variant report

Variant	rs11162068
Chromosome Location	chr1:76478305-76478306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10493579	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11581154	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12116904	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251569	1.00[YRI][hapmap]
rs1340689	1.00[JPT][hapmap]
rs17097933	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17599188	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17660966	1.00[YRI][hapmap]
rs2631778	1.00[YRI][hapmap]
rs2992502	1.00[YRI][hapmap]
rs3011997	1.00[YRI][hapmap]
rs387214	1.00[YRI][hapmap]
rs423152	1.00[YRI][hapmap]
rs434633	1.00[YRI][hapmap]
rs58865154	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs603022	1.00[YRI][hapmap]
rs61771294	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs681280	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76474800-76478400	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76475200-76478600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:76477400-76479800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:76477600-76479800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:76478000-76478800	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:76478000-76479200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:76478000-76480000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:76478200-76478600	Enhancers	Fetal Kidney	kidney
9	chr1:76478200-76479400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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