Variant report

Variant	rs11162112
Chromosome Location	chr1:76745026-76745027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11162110	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11810865	1.00[EUR][1000 genomes]
rs12080772	1.00[EUR][1000 genomes]
rs17098968	1.00[EUR][1000 genomes]
rs291073	1.00[EUR][1000 genomes]
rs73006144	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76735600-76750600	Weak transcription	Left Ventricle	heart
2	chr1:76739600-76749200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:76743600-76745200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:76744200-76745600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:76744400-76745200	Enhancers	Brain Cingulate Gyrus	brain
6	chr1:76744600-76745200	Enhancers	Brain Hippocampus Middle	brain
7	chr1:76744600-76745400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:76744600-76745400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:76744600-76745400	Enhancers	Fetal Thymus	thymus
10	chr1:76744600-76745800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr1:76744600-76746200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:76744800-76745200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:76744800-76745200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr1:76744800-76745400	Flanking Active TSS	Fetal Kidney	kidney
15	chr1:76744800-76745400	Flanking Active TSS	Fetal Lung	lung
16	chr1:76744800-76745600	Active TSS	Stomach Smooth Muscle	stomach
17	chr1:76744800-76745800	Enhancers	Fetal Heart	heart
18	chr1:76744800-76745800	Enhancers	Fetal Stomach	stomach
19	chr1:76745000-76745200	Enhancers	Right Atrium	heart
20	chr1:76745000-76745400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:76745000-76745400	Active TSS	Brain Substantia Nigra	brain
22	chr1:76745000-76745400	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr1:76745000-76745600	Flanking Active TSS	Aorta	Aorta
24	chr1:76745000-76745600	Enhancers	Fetal Muscle Trunk	muscle
25	chr1:76745000-76747000	Weak transcription	Fetal Brain Male	brain
26	chr1:76745000-76747000	Weak transcription	Fetal Brain Female	brain
27	chr1:76745000-76749000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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