Variant report

Variant	rs11162201
Chromosome Location	chr8:91279348-91279349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1007512	0.83[EUR][1000 genomes]
rs11162250	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11162302	0.95[EUR][1000 genomes]
rs11162315	0.95[EUR][1000 genomes]
rs11162360	0.92[EUR][1000 genomes]
rs11162513	0.83[EUR][1000 genomes]
rs12021751	0.95[EUR][1000 genomes]
rs1335095	0.95[EUR][1000 genomes]
rs1413991	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1526507	0.83[EUR][1000 genomes]
rs1852347	0.83[EUR][1000 genomes]
rs4559444	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4949725	0.83[EUR][1000 genomes]
rs6685645	0.92[EUR][1000 genomes]
rs9787288	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91275600-91283800	Weak transcription	K562	blood
2	chr8:91279200-91280200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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