The 2.0 version of rSNPBase

Variant report

Variant rs11164312
Chromosome Location chr1:92852390-92852391
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92804400-92853200 Weak transcription NHEK skin
2 chr1:92815000-92853200 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:92818000-92852600 Weak transcription Colon Smooth Muscle Colon
4 chr1:92818800-92853000 Weak transcription Osteobl bone
5 chr1:92823600-92853200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:92824400-92852400 Weak transcription Colonic Mucosa Colon
7 chr1:92825600-92852400 Weak transcription HepG2 liver
8 chr1:92825600-92852800 Weak transcription HMEC breast
9 chr1:92826000-92852600 Weak transcription Brain Anterior Caudate brain
10 chr1:92826200-92853000 Weak transcription Fetal Brain Male brain
11 chr1:92833400-92855000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr1:92833400-92856000 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr1:92833600-92852600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr1:92833600-92852800 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr1:92834400-92855200 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr1:92835400-92855200 Weak transcription Hela-S3 cervix
17 chr1:92836200-92852400 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr1:92844200-92855600 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:92847000-92852800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:92847000-92853200 Weak transcription Psoas Muscle Psoas
21 chr1:92847000-92853800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:92847200-92852600 Weak transcription Brain Hippocampus Middle brain
23 chr1:92847200-92854000 Weak transcription Brain Angular Gyrus brain
24 chr1:92849600-92853200 Strong transcription Cortex derived primary cultured neurospheres brain
25 chr1:92849600-92854800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:92849600-92854800 ZNF genes & repeats Aorta Aorta
27 chr1:92849600-92855200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:92849800-92854000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:92849800-92855200 ZNF genes & repeats Fetal Intestine Small intestine
30 chr1:92850000-92855200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
31 chr1:92850200-92852600 Strong transcription Fetal Muscle Trunk muscle
32 chr1:92850200-92855000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:92850200-92855000 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
34 chr1:92850200-92855200 ZNF genes & repeats Liver Liver
35 chr1:92850200-92855200 ZNF genes & repeats Fetal Brain Female brain
36 chr1:92850200-92855400 ZNF genes & repeats Fetal Lung lung
37 chr1:92850400-92853200 Strong transcription Fetal Stomach stomach
38 chr1:92850600-92853200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:92850800-92853200 Weak transcription H9 Cell Line embryonic stem cell
40 chr1:92850800-92853800 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr1:92850800-92855000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr1:92851000-92852800 ZNF genes & repeats Stomach Smooth Muscle stomach
43 chr1:92851200-92852600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:92851200-92854800 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr1:92851200-92855200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr1:92851200-92855400 Strong transcription Skeletal Muscle Female skeletal muscle
47 chr1:92851400-92852400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:92851400-92853000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:92851400-92853000 Strong transcription Fetal Intestine Large intestine
50 chr1:92851400-92853200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015