Variant report

Variant	rs11164818
Chromosome Location	chr1:93265814-93265815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93249930..93252918-chr1:93264850..93266907,2	MCF-7	breast:
2	chr1:93260518..93262518-chr1:93265417..93267735,2	K562	blood:

Variant related genes	Relation type
ENSG00000067208	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10735783	0.82[EUR][1000 genomes]
rs10735784	0.82[EUR][1000 genomes]
rs10782942	0.82[EUR][1000 genomes]
rs11164799	0.81[EUR][1000 genomes]
rs11164804	0.82[EUR][1000 genomes]
rs11164805	0.82[EUR][1000 genomes]
rs11164808	0.82[EUR][1000 genomes]
rs11164809	0.82[EUR][1000 genomes]
rs11164812	0.84[EUR][1000 genomes]
rs11164813	0.84[EUR][1000 genomes]
rs1182640	0.82[EUR][1000 genomes]
rs12029026	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1337108	0.82[EUR][1000 genomes]
rs1337109	0.82[EUR][1000 genomes]
rs1932967	0.82[EUR][1000 genomes]
rs1977224	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2025101	0.82[EUR][1000 genomes]
rs2077529	0.81[EUR][1000 genomes]
rs2107520	0.82[EUR][1000 genomes]
rs2107521	0.82[EUR][1000 genomes]
rs2158446	0.82[EUR][1000 genomes]
rs2180977	0.82[EUR][1000 genomes]
rs2244496	0.85[ASN][1000 genomes]
rs2298912	0.82[EUR][1000 genomes]
rs2391194	0.82[EUR][1000 genomes]
rs2391196	0.82[EUR][1000 genomes]
rs35054144	0.82[EUR][1000 genomes]
rs3790445	0.82[EUR][1000 genomes]
rs3790446	0.82[EUR][1000 genomes]
rs4264007	0.82[EUR][1000 genomes]
rs4525050	0.82[EUR][1000 genomes]
rs4638137	0.82[EUR][1000 genomes]
rs4847217	0.82[EUR][1000 genomes]
rs4847285	0.82[EUR][1000 genomes]
rs4847304	0.82[EUR][1000 genomes]
rs4847309	0.82[EUR][1000 genomes]
rs4847310	0.82[EUR][1000 genomes]
rs4847363	0.82[EUR][1000 genomes]
rs4847370	0.84[EUR][1000 genomes]
rs6604010	0.82[EUR][1000 genomes]
rs6604012	0.82[EUR][1000 genomes]
rs6604015	0.82[EUR][1000 genomes]
rs6604018	0.82[EUR][1000 genomes]
rs6604022	0.82[EUR][1000 genomes]
rs6660296	0.82[EUR][1000 genomes]
rs6661600	0.82[EUR][1000 genomes]
rs6665579	0.82[EUR][1000 genomes]
rs6669914	0.81[EUR][1000 genomes]
rs6676454	0.82[EUR][1000 genomes]
rs6685705	0.82[EUR][1000 genomes]
rs6693371	0.84[EUR][1000 genomes]
rs723909	0.82[EUR][1000 genomes]
rs7513815	0.82[EUR][1000 genomes]
rs7521345	0.82[EUR][1000 genomes]
rs7543327	0.82[EUR][1000 genomes]
rs7543964	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7549844	0.82[EUR][1000 genomes]
rs7551340	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7551880	0.84[EUR][1000 genomes]
rs7552085	0.82[EUR][1000 genomes]
rs7554868	0.82[EUR][1000 genomes]
rs757469	0.82[EUR][1000 genomes]
rs9439920	0.82[EUR][1000 genomes]
rs9439924	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs976208	0.82[EUR][1000 genomes]
rs976209	0.82[EUR][1000 genomes]
rs980940	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv947289	chr1:93251307-93276080	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93258000-93268400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:93258000-93270200	Weak transcription	Right Atrium	heart
3	chr1:93258800-93269800	Weak transcription	Fetal Heart	heart
4	chr1:93261200-93270200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:93261400-93268600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:93261600-93270000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:93263800-93270600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:93264000-93269800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:93264000-93269800	Weak transcription	NH-A	brain
10	chr1:93264400-93269400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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