The 2.0 version of rSNPBase

Variant report

Variant rs11164906
Chromosome Location chr1:93790888-93790889
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93751600-93794600 Weak transcription Brain Substantia Nigra brain
2 chr1:93753000-93803600 Weak transcription Adipose Nuclei Adipose
3 chr1:93753200-93806400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr1:93755400-93802600 Weak transcription Primary B cells from cord blood blood
5 chr1:93755400-93803200 Weak transcription Fetal Thymus thymus
6 chr1:93755600-93803400 Weak transcription Fetal Intestine Large intestine
7 chr1:93755600-93804200 Weak transcription Brain Anterior Caudate brain
8 chr1:93755800-93801400 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr1:93756000-93803800 Weak transcription Primary T cells fromperipheralblood blood
10 chr1:93765800-93809800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr1:93767800-93801400 Weak transcription Primary hematopoietic stem cells blood
12 chr1:93768600-93791600 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr1:93768600-93803000 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:93772600-93806000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr1:93779600-93804000 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:93783000-93803400 Weak transcription Left Ventricle heart
17 chr1:93783800-93801200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:93784400-93804000 Weak transcription Thymus Thymus
19 chr1:93786200-93803800 Weak transcription Primary B cells from peripheral blood blood
20 chr1:93786400-93791800 Enhancers Stomach Mucosa stomach
21 chr1:93789000-93797200 Weak transcription Placenta Amnion Placenta Amnion
22 chr1:93789000-93803800 Weak transcription Placenta Placenta
23 chr1:93789200-93810200 Weak transcription Esophagus oesophagus
24 chr1:93789400-93791200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:93789400-93793400 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:93789600-93800400 Weak transcription Primary T cells from cord blood blood
27 chr1:93789600-93806600 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr1:93789800-93791000 Flanking Active TSS Muscle Satellite Cultured Cells --
29 chr1:93789800-93791400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:93789800-93791400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:93790000-93791000 Enhancers ES-I3 Cell Line embryonic stem cell
32 chr1:93790200-93791000 Enhancers HUES6 Cell Line embryonic stem cell
33 chr1:93790200-93791000 Flanking Active TSS A549 lung
34 chr1:93790200-93791000 Flanking Active TSS HSMM muscle
35 chr1:93790200-93791000 Enhancers NHDF-Ad bronchial
36 chr1:93790200-93791200 Flanking Active TSS NHEK skin
37 chr1:93790200-93791400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:93790200-93794000 Weak transcription Fetal Lung lung
39 chr1:93790400-93791000 Enhancers HUES64 Cell Line embryonic stem cell
40 chr1:93790400-93791000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:93790400-93791000 Flanking Active TSS Osteobl bone
42 chr1:93790400-93791200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:93790400-93794600 Weak transcription Pancreatic Islets Pancreatic Islet
44 chr1:93790400-93800200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:93790600-93791000 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:93790600-93791000 Flanking Active TSS HMEC breast
47 chr1:93790600-93791000 Flanking Active TSS NH-A brain
48 chr1:93790600-93791200 Flanking Active TSS Hela-S3 cervix
49 chr1:93790600-93791600 Enhancers HSMMtube muscle
50 chr1:93790600-93794200 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015