The 2.0 version of rSNPBase

Variant report

Variant rs11164977
Chromosome Location chr1:94216478-94216479
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94199400-94217400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:94212600-94217200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:94213200-94216800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr1:94213400-94217800 Enhancers Primary B cells from peripheral blood blood
5 chr1:94214400-94218000 Enhancers Fetal Thymus thymus
6 chr1:94215200-94217200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr1:94215200-94217800 Enhancers Dnd41 blood
8 chr1:94215400-94216800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:94215400-94216800 Enhancers Fetal Intestine Large intestine
10 chr1:94215400-94217400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:94215600-94216800 Enhancers Right Atrium heart
12 chr1:94215600-94217000 Enhancers Skeletal Muscle Male skeletal muscle
13 chr1:94215600-94217200 Enhancers Primary T cells from cord blood blood
14 chr1:94215600-94217200 Enhancers HepG2 liver
15 chr1:94215600-94217400 Enhancers Primary hematopoietic stem cells blood
16 chr1:94215600-94217400 Enhancers Primary hematopoietic stem cells short term culture blood
17 chr1:94215600-94218000 Enhancers Primary T cells fromperipheralblood blood
18 chr1:94215600-94218000 Enhancers Fetal Muscle Leg muscle
19 chr1:94215600-94218000 Enhancers Thymus Thymus
20 chr1:94215600-94218200 Enhancers Adipose Nuclei Adipose
21 chr1:94215600-94218400 Enhancers Primary Natural Killer cells fromperipheralblood blood
22 chr1:94215600-94218400 Enhancers Left Ventricle heart
23 chr1:94215600-94218400 Enhancers Right Ventricle heart
24 chr1:94215600-94218800 Bivalent Enhancer Fetal Heart heart
25 chr1:94215600-94219200 Enhancers Colon Smooth Muscle Colon
26 chr1:94215600-94219400 Enhancers Hela-S3 cervix
27 chr1:94215600-94220000 Enhancers Skeletal Muscle Female skeletal muscle
28 chr1:94215600-94220600 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr1:94215800-94216600 Weak transcription Aorta Aorta
30 chr1:94215800-94216600 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr1:94215800-94216600 Weak transcription Placenta Placenta
32 chr1:94215800-94217200 Enhancers Primary T helper cells PMA-I stimulated --
33 chr1:94215800-94217400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:94215800-94217800 Enhancers Spleen Spleen
35 chr1:94215800-94218000 Enhancers Lung lung
36 chr1:94215800-94218400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:94215800-94220200 Enhancers Fetal Lung lung
38 chr1:94216000-94217000 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr1:94216000-94217000 Enhancers GM12878-XiMat blood
40 chr1:94216000-94217600 Enhancers Primary B cells from cord blood blood
41 chr1:94216000-94224800 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr1:94216200-94216600 Weak transcription Brain Anterior Caudate brain
43 chr1:94216200-94216600 Weak transcription Rectal Smooth Muscle rectum
44 chr1:94216200-94216800 Genic enhancers NHEK skin
45 chr1:94216200-94217200 Enhancers Brain Inferior Temporal Lobe brain
46 chr1:94216200-94218000 Enhancers Esophagus oesophagus
47 chr1:94216200-94218000 Enhancers Fetal Muscle Trunk muscle
48 chr1:94216200-94218800 Weak transcription A549 lung
49 chr1:94216200-94219800 Enhancers Psoas Muscle Psoas
50 chr1:94216200-94219800 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015