The 2.0 version of rSNPBase

Variant report

Variant rs11164982
Chromosome Location chr1:94240896-94240897
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94220000-94254200 Weak transcription Aorta Aorta
2 chr1:94235600-94241600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:94235600-94245200 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:94235600-94245200 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr1:94235800-94241600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:94235800-94245200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:94235800-94245200 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr1:94236000-94244600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr1:94236000-94245400 Weak transcription H1 Cell Line embryonic stem cell
10 chr1:94236000-94245400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:94236200-94247400 Weak transcription Fetal Intestine Small intestine
12 chr1:94237200-94241000 Enhancers Fetal Muscle Leg muscle
13 chr1:94237400-94241000 Enhancers Skeletal Muscle Male skeletal muscle
14 chr1:94237400-94241000 Enhancers Skeletal Muscle Female skeletal muscle
15 chr1:94239000-94241000 Flanking Active TSS NHEK skin
16 chr1:94239400-94242800 Enhancers Breast Myoepithelial Primary Cells Breast
17 chr1:94239400-94245200 Weak transcription Psoas Muscle Psoas
18 chr1:94239600-94242200 Weak transcription HepG2 liver
19 chr1:94239800-94241000 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:94240000-94241000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:94240000-94241000 Flanking Active TSS Hela-S3 cervix
22 chr1:94240000-94241000 Flanking Active TSS HMEC breast
23 chr1:94240000-94241000 Enhancers HSMM muscle
24 chr1:94240000-94241200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:94240000-94241200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:94240000-94241200 Enhancers Fetal Stomach stomach
27 chr1:94240200-94241000 Enhancers Cortex derived primary cultured neurospheres brain
28 chr1:94240400-94241000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:94240400-94241200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:94240600-94241000 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr1:94240600-94241000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:94240600-94241000 Enhancers Placenta Placenta
33 chr1:94240600-94241000 Enhancers Lung lung
34 chr1:94240600-94241400 Enhancers Brain Anterior Caudate brain
35 chr1:94240600-94241800 Enhancers HUES6 Cell Line embryonic stem cell
36 chr1:94240600-94241800 Enhancers Brain Hippocampus Middle brain
37 chr1:94240600-94243000 Enhancers A549 lung
38 chr1:94240800-94241000 Enhancers ES-WA7 Cell Line embryonic stem cell
39 chr1:94240800-94241000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:94240800-94241000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
41 chr1:94240800-94241000 Bivalent Enhancer Fetal Heart heart
42 chr1:94240800-94241200 Bivalent Enhancer Fetal Lung lung
43 chr1:94240800-94241200 Enhancers Fetal Muscle Trunk muscle
44 chr1:94240800-94241600 Enhancers Fetal Brain Male brain
45 chr1:94240800-94244600 Weak transcription Muscle Satellite Cultured Cells --
46 chr1:94240800-94245000 Weak transcription Osteobl bone

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Last update: Aug 31, 2015