Variant report

Variant	rs11164994
Chromosome Location	chr1:94251457-94251458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94243077..94247180-chr1:94249014..94254909,5	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10489605	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10874795	0.91[ASN][1000 genomes]
rs1108527	0.81[EUR][1000 genomes]
rs1108528	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11165001	0.97[ASN][1000 genomes]
rs11165019	0.91[ASN][1000 genomes]
rs12079584	0.91[ASN][1000 genomes]
rs12239830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1467129	0.82[CEU][hapmap]
rs17100397	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17110408	0.97[ASN][1000 genomes]
rs17304770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17878271	0.85[EUR][1000 genomes]
rs17878294	0.85[EUR][1000 genomes]
rs17881810	0.85[EUR][1000 genomes]
rs17884788	0.85[EUR][1000 genomes]
rs17885151	0.85[EUR][1000 genomes]
rs17886352	0.85[EUR][1000 genomes]
rs1877605	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[EUR][1000 genomes]
rs2223908	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761913	0.89[EUR][1000 genomes]
rs41292665	0.90[EUR][1000 genomes]
rs4526623	1.00[CHB][hapmap]
rs57870303	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58410484	0.82[AMR][1000 genomes]
rs61425457	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61781048	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61781049	0.94[EUR][1000 genomes]
rs61781051	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61781053	0.98[EUR][1000 genomes]
rs61781054	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61781055	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61781056	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61781057	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782162	0.90[EUR][1000 genomes]
rs61782163	0.90[EUR][1000 genomes]
rs61782164	0.89[EUR][1000 genomes]
rs61782165	0.85[EUR][1000 genomes]
rs61782398	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782399	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782400	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782403	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61782404	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61782405	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61782410	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61782413	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61782449	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61782450	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61782451	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61782458	0.89[EUR][1000 genomes]
rs61782459	0.87[EUR][1000 genomes]
rs6660794	0.97[ASN][1000 genomes]
rs6671839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6674149	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689215	0.94[ASN][1000 genomes]
rs6689746	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs6703468	0.97[ASN][1000 genomes]
rs717913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs72723114	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723118	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723125	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723138	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723157	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72723165	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72723169	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72723178	0.90[EUR][1000 genomes]
rs72967397	0.91[ASN][1000 genomes]
rs7523682	0.94[EUR][1000 genomes]
rs871436	0.82[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546822	chr1:94246577-94289863	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1815663	chr1:94246577-94291252	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1877	chr1:94247756-94292908	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2442893	chr1:94250205-94251794	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2062392	chr1:94251257-94251961	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3320429	chr1:94251334-94251878	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3320433	chr1:94251390-94251844	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3320428	chr1:94251397-94251848	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3320431	chr1:94251401-94251797	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3320432	chr1:94251445-94251776	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
2	chr1:94245600-94253000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:94246600-94255400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:94246800-94266600	Weak transcription	A549	lung
5	chr1:94249000-94252000	Weak transcription	Hela-S3	cervix
6	chr1:94249000-94263600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:94251000-94252200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:94251200-94252200	Weak transcription	HepG2	liver
9	chr1:94251400-94251800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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