The 2.0 version of rSNPBase

Variant report

Variant rs11165009
Chromosome Location chr1:94287996-94287997
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94279600-94302800 Weak transcription Stomach Smooth Muscle stomach
2 chr1:94280000-94290000 Weak transcription Brain Angular Gyrus brain
3 chr1:94281200-94289600 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:94283000-94288400 Weak transcription NHDF-Ad bronchial
5 chr1:94283400-94290000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr1:94283400-94310000 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr1:94283600-94288400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr1:94283600-94293400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:94284000-94294600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr1:94284200-94292200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:94284200-94306200 Weak transcription Fetal Muscle Trunk muscle
12 chr1:94284200-94311200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr1:94284400-94289600 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:94284400-94296000 Weak transcription Fetal Intestine Small intestine
15 chr1:94285000-94288400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:94285400-94288000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr1:94285600-94288800 Enhancers Placenta Placenta
18 chr1:94286400-94294800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr1:94286600-94295600 Enhancers Placenta Amnion Placenta Amnion
20 chr1:94286800-94288600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:94287000-94288800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:94287000-94289400 Enhancers HMEC breast
23 chr1:94287000-94292400 Weak transcription HUVEC blood vessel
24 chr1:94287200-94288200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr1:94287200-94289000 Enhancers NHEK skin
26 chr1:94287400-94288200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:94287400-94288600 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr1:94287400-94289000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:94287400-94293600 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr1:94287600-94291400 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr1:94287600-94292600 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr1:94287600-94292800 Weak transcription H1 Cell Line embryonic stem cell
33 chr1:94287600-94292800 Weak transcription A549 lung
34 chr1:94287600-94292800 Weak transcription HSMM muscle
35 chr1:94287600-94292800 Weak transcription HSMMtube muscle
36 chr1:94287600-94292800 Weak transcription NH-A brain
37 chr1:94287600-94293200 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr1:94287600-94294000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:94287800-94288200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:94287800-94288600 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr1:94287800-94292800 Weak transcription H9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015