Variant report

Variant	rs11165010
Chromosome Location	chr1:92050806-92050807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92049054..92051542-chr1:92061265..92062961,2	K562	blood:
2	chr1:92049157..92050899-chr1:92056086..92058376,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11164996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12023393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12023428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12046806	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17131493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1848436	0.81[ASN][1000 genomes]
rs6681340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6685470	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92036400-92051000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:92041800-92051200	Weak transcription	Fetal Brain Male	brain
3	chr1:92045400-92051400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:92046000-92055000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:92047200-92052000	Enhancers	Fetal Stomach	stomach
6	chr1:92047600-92051000	Enhancers	Ovary	ovary
7	chr1:92048000-92051800	Enhancers	Colon Smooth Muscle	Colon
8	chr1:92048000-92052200	Enhancers	Stomach Smooth Muscle	stomach
9	chr1:92048200-92051000	Weak transcription	Aorta	Aorta
10	chr1:92048400-92054200	Weak transcription	K562	blood
11	chr1:92049000-92051000	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr1:92049400-92051000	Weak transcription	Right Ventricle	heart
13	chr1:92049400-92056400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:92049600-92061600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:92050000-92051000	Weak transcription	Right Atrium	heart
16	chr1:92050000-92051600	Enhancers	Fetal Kidney	kidney
17	chr1:92050200-92051000	Weak transcription	Left Ventricle	heart
18	chr1:92050200-92051000	Weak transcription	Lung	lung
19	chr1:92050400-92051000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr1:92050400-92051000	Enhancers	Rectal Smooth Muscle	rectum
21	chr1:92050400-92051800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:92050400-92052200	Enhancers	Primary hematopoietic stem cells	blood
23	chr1:92050400-92052200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr1:92050600-92051200	Enhancers	Fetal Lung	lung
25	chr1:92050600-92051400	Enhancers	Primary B cells from cord blood	blood
26	chr1:92050600-92051600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:92050600-92052000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr1:92050800-92051000	Enhancers	Spleen	Spleen
29	chr1:92050800-92051000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
30	chr1:92050800-92051200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:92050800-92051200	Flanking Active TSS	Fetal Heart	heart
32	chr1:92050800-92051600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:92050800-92051600	Enhancers	Fetal Thymus	thymus
34	chr1:92050800-92054200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links