The 2.0 version of rSNPBase

Variant report

Variant rs11169078
Chromosome Location chr12:49978424-49978425
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:49963000-49979200 Weak transcription H9 Cell Line embryonic stem cell
2 chr12:49963000-49979200 Weak transcription Placenta Amnion Placenta Amnion
3 chr12:49963000-49982200 Weak transcription NHLF lung
4 chr12:49963000-49984800 Weak transcription Small Intestine intestine
5 chr12:49963000-50003200 Weak transcription Aorta Aorta
6 chr12:49963200-49986800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr12:49963400-49984800 Weak transcription Primary B cells from cord blood blood
8 chr12:49967800-49987400 Weak transcription Hela-S3 cervix
9 chr12:49971200-49984800 Weak transcription Primary hematopoietic stem cells blood
10 chr12:49972000-49982200 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr12:49973800-49982400 Weak transcription Monocytes-CD14+_RO01746 blood
12 chr12:49974400-49978600 Enhancers Skeletal Muscle Female skeletal muscle
13 chr12:49974400-49982400 Weak transcription NHDF-Ad bronchial
14 chr12:49974400-49983000 Weak transcription Gastric stomach
15 chr12:49974600-49982600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr12:49974800-49979400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr12:49974800-49979400 Weak transcription HUVEC blood vessel
18 chr12:49974800-49982000 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr12:49974800-49983400 Weak transcription Colonic Mucosa Colon
20 chr12:49974800-49984600 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr12:49974800-49984800 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr12:49974800-49984800 Weak transcription Fetal Thymus thymus
23 chr12:49974800-49985200 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr12:49974800-49985800 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr12:49974800-49986200 Weak transcription K562 blood
26 chr12:49974800-49986600 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr12:49974800-49986600 Weak transcription NH-A brain
28 chr12:49975000-49979200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr12:49975000-49979400 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr12:49975000-49979600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr12:49975000-49982400 Weak transcription HMEC breast
32 chr12:49975000-49982800 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr12:49975000-49984800 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr12:49975000-49986200 Weak transcription H1 Cell Line embryonic stem cell
35 chr12:49975000-49986400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr12:49975000-49987000 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr12:49975200-49979000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr12:49975400-49980200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr12:49975400-49983200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr12:49975600-49978600 Enhancers Ovary ovary
41 chr12:49976000-49978600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr12:49976000-49981600 Strong transcription Primary T cells from cord blood blood
43 chr12:49976000-49983200 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr12:49976200-49979400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr12:49976200-49980000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
46 chr12:49976200-49980800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr12:49976400-49980000 Genic enhancers Fetal Adrenal Gland Adrenal Gland
48 chr12:49976400-49982200 Weak transcription GM12878-XiMat blood
49 chr12:49976400-49982400 Weak transcription Psoas Muscle Psoas
50 chr12:49976600-49978600 Strong transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015