Variant report

Variant	rs11169457
Chromosome Location	chr12:50891144-50891145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10431486	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10459233	0.81[EUR][1000 genomes]
rs10747584	0.81[EUR][1000 genomes]
rs10747585	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10783369	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10783370	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10783371	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10783372	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10783373	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10783374	0.84[EUR][1000 genomes]
rs10783378	0.84[EUR][1000 genomes]
rs10876042	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876043	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10876047	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10876051	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876052	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876053	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10876056	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10876058	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876060	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10876061	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10876063	0.84[EUR][1000 genomes]
rs10876065	0.84[EUR][1000 genomes]
rs11169479	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11169480	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11169481	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169483	0.82[ASN][1000 genomes]
rs11169487	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11169493	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169498	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11613488	0.84[EUR][1000 genomes]
rs12582712	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12827022	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34867510	0.80[EUR][1000 genomes]
rs3893353	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3935869	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4131769	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4516034	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768850	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4768852	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4768853	0.84[EUR][1000 genomes]
rs4768884	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4768888	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768889	0.84[EUR][1000 genomes]
rs4768890	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768892	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4768893	0.84[EUR][1000 genomes]
rs4768895	0.84[EUR][1000 genomes]
rs55680342	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55877451	0.83[EUR][1000 genomes]
rs7138604	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7956591	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50890400-50892600	ZNF genes & repeats	Liver	Liver
2	chr12:50891000-50892400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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