Variant report

Variant	rs11169681
Chromosome Location	chr12:51430949-51430950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11169653	0.80[EUR][1000 genomes]
rs11169658	0.80[EUR][1000 genomes]
rs11169662	0.80[EUR][1000 genomes]
rs11169674	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11169675	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11169687	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11169688	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11169700	0.86[AMR][1000 genomes]
rs12227734	0.80[EUR][1000 genomes]
rs17125365	0.86[AMR][1000 genomes]
rs2239860	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2269682	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2269683	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3809320	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4768957	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7295893	0.80[EUR][1000 genomes]
rs8490	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414501	chr12:51174503-51534707	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51422800-51432000	Weak transcription	Stomach Mucosa	stomach
2	chr12:51423800-51431800	Weak transcription	Hela-S3	cervix
3	chr12:51430400-51431400	Enhancers	HepG2	liver
4	chr12:51430400-51434800	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links