Variant report

Variant	rs11169738
Chromosome Location	chr12:51568931-51568932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51568437..51570168-chr12:51571133..51573432,2	K562	blood:
2	chr12:51564447..51569582-chr12:51630930..51635335,8	K562	blood:
3	chr12:51475324..51477948-chr12:51566462..51569488,3	MCF-7	breast:
4	chr12:51563450..51568971-chr12:51609008..51613972,14	K562	blood:
5	chr12:51567118..51569511-chr12:51775066..51777946,2	K562	blood:
6	chr12:51564257..51569582-chr12:51630930..51636873,13	K562	blood:

Variant related genes	Relation type
ENSG00000139629	Chromatin interaction
ENSG00000184271	Chromatin interaction
ENSG00000183283	Chromatin interaction
ENSG00000110925	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10876150	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169733	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169734	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169735	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11169737	0.82[ASN][1000 genomes]
rs11169740	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11169741	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169747	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11169751	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2452796	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2640515	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2640518	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28392616	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2934092	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2956427	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768971	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60203224	0.80[ASN][1000 genomes]
rs6580802	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7136657	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7305956	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7309374	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7399089	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7399090	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7959264	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7964762	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7974242	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7980006	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51567400-51569000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:51567400-51569200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:51567400-51577200	Weak transcription	Fetal Kidney	kidney
4	chr12:51567400-51583400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:51567400-51584000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:51567400-51610600	Weak transcription	Right Atrium	heart

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