Variant report

Variant	rs11169743
Chromosome Location	chr12:51575533-51575534
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51475687..51477210-chr12:51574372..51576503,2	K562	blood:
2	chr12:51574575..51576474-chr12:51592776..51594992,2	K562	blood:

Variant related genes	Relation type
ENSG00000110925	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1056897	0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169726	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169727	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169729	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169731	0.84[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169732	0.87[EUR][1000 genomes]
rs11169736	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169742	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169754	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809832	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12810455	0.83[EUR][1000 genomes]
rs12811508	0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs12819225	0.83[EUR][1000 genomes]
rs12820559	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12829630	0.83[EUR][1000 genomes]
rs12833565	0.83[EUR][1000 genomes]
rs17296192	0.84[CHB][hapmap];0.81[EUR][1000 genomes]
rs34481246	0.83[EUR][1000 genomes]
rs34498074	0.91[EUR][1000 genomes]
rs6580792	0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs6580793	0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs67293043	0.83[EUR][1000 genomes]
rs7958064	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7960381	0.81[EUR][1000 genomes]
rs7977104	0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51567400-51577200	Weak transcription	Fetal Kidney	kidney
2	chr12:51567400-51583400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:51567400-51584000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:51567400-51610600	Weak transcription	Right Atrium	heart
5	chr12:51574800-51583400	Weak transcription	Aorta	Aorta
6	chr12:51575200-51575600	Enhancers	Fetal Muscle Leg	muscle
7	chr12:51575200-51575800	Enhancers	HepG2	liver
8	chr12:51575400-51575600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:51575400-51575800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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