Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10876989	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10877100	0.83[ASN][1000 genomes]
rs11172183	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11172235	0.84[EUR][1000 genomes]
rs11172264	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172282	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172319	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11172357	0.87[ASN][1000 genomes]
rs11172386	0.87[ASN][1000 genomes]
rs11172392	0.87[ASN][1000 genomes]
rs11172492	0.83[ASN][1000 genomes]
rs11172493	0.83[ASN][1000 genomes]
rs11172541	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11172625	0.81[ASN][1000 genomes]
rs11172638	0.81[ASN][1000 genomes]
rs11172650	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4284427	0.81[ASN][1000 genomes]
rs4320988	0.87[ASN][1000 genomes]
rs4378431	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4390378	0.82[ASN][1000 genomes]
rs4466883	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4500523	0.86[ASN][1000 genomes]
rs4564382	0.84[EUR][1000 genomes]
rs59695906	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs60263267	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60900225	0.84[EUR][1000 genomes]
rs6581188	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7485730	0.81[ASN][1000 genomes]
rs7966540	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7968837	0.82[ASN][1000 genomes]
rs7974928	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1044049	chr12:39845078-39922808	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1051709	chr12:39846990-39899051	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39884000-39885400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:39884000-39885800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr12:39884200-39885600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:39884400-39885400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:39884400-39885600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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