Variant report

Variant	rs11174370
Chromosome Location	chr12:40330822-40330823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10506138	1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[MKK][hapmap];0.86[ASN][1000 genomes]
rs1086490	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10877779	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10877837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs11173671	1.00[CHD][hapmap]
rs11173862	1.00[ASW][hapmap]
rs11174266	0.86[ASN][1000 genomes]
rs11174285	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11174292	1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[MKK][hapmap];0.86[ASN][1000 genomes]
rs11174293	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11174427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174532	0.83[EUR][1000 genomes]
rs11174533	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11514248	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11564133	1.00[JPT][hapmap]
rs11564139	1.00[JPT][hapmap]
rs11564160	1.00[JPT][hapmap]
rs11564221	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11564223	1.00[JPT][hapmap]
rs11564282	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs12312535	1.00[JPT][hapmap]
rs12371119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12810368	1.00[JPT][hapmap]
rs12827948	1.00[JPT][hapmap]
rs1482282	1.00[JPT][hapmap]
rs17442108	1.00[JPT][hapmap]
rs17442304	1.00[JPT][hapmap]
rs17442469	1.00[JPT][hapmap]
rs17461082	1.00[JPT][hapmap]
rs17483628	1.00[JPT][hapmap]
rs17559478	1.00[JPT][hapmap]
rs2046929	1.00[JPT][hapmap]
rs28370607	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28370611	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28370644	1.00[JPT][hapmap]
rs28370654	1.00[JPT][hapmap]
rs28370656	1.00[JPT][hapmap]
rs28370659	1.00[JPT][hapmap]
rs28370681	1.00[JPT][hapmap]
rs28370805	1.00[JPT][hapmap]
rs4128689	1.00[CHB][hapmap]
rs4399379	1.00[JPT][hapmap]
rs7311756	1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs74089317	0.86[ASN][1000 genomes]
rs7969495	1.00[JPT][hapmap]
rs992851	1.00[ASW][hapmap];0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2757500	chr12:40299913-40331853	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv2759895	chr12:40299913-40331853	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv8967	chr12:40327912-40330937	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40323600-40337800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr12:40328200-40332000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr12:40329600-40339800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:40330000-40340000	Weak transcription	Ovary	ovary
5	chr12:40330600-40332000	Enhancers	K562	blood
6	chr12:40330800-40331400	Enhancers	Liver	Liver

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