Variant report

Variant	rs11174620
Chromosome Location	chr12:63111885-63111886
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63110549..63113647-chr12:63118288..63120873,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10877911	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs11174619	0.83[JPT][hapmap]
rs11174621	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs11174626	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs13313182	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17733713	0.81[EUR][1000 genomes]
rs2270484	0.84[CHB][hapmap]
rs57941935	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61919551	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7135080	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7295577	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs7308302	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs7312352	0.83[CHB][hapmap];0.85[JPT][hapmap]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:63087200-63113600	Weak transcription	Liver	Liver
4	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
5	chr12:63097000-63118800	Weak transcription	Stomach Mucosa	stomach
6	chr12:63097800-63114400	Weak transcription	Aorta	Aorta
7	chr12:63098600-63115600	Strong transcription	HepG2	liver
8	chr12:63103000-63112800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:63103200-63112800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:63103200-63114400	Weak transcription	Right Ventricle	heart
11	chr12:63103400-63118800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr12:63103800-63112400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:63104000-63112000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:63104400-63118800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:63104800-63112000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr12:63105400-63115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:63105800-63114600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:63107200-63112000	Enhancers	Brain Substantia Nigra	brain
19	chr12:63107200-63113000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr12:63107200-63125000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr12:63107400-63112800	Weak transcription	Placenta	Placenta
22	chr12:63107600-63112000	Enhancers	Fetal Kidney	kidney
23	chr12:63108800-63112800	Weak transcription	HSMM	muscle
24	chr12:63108800-63114400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr12:63109000-63112400	Weak transcription	HSMMtube	muscle
26	chr12:63109200-63112200	Enhancers	Brain Hippocampus Middle	brain
27	chr12:63109200-63113800	Weak transcription	NHLF	lung
28	chr12:63109200-63114400	Weak transcription	Lung	lung
29	chr12:63109200-63114400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr12:63109200-63114800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr12:63109200-63122200	Weak transcription	Gastric	stomach
32	chr12:63109400-63112800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr12:63109400-63112800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:63109400-63112800	Weak transcription	Left Ventricle	heart
35	chr12:63109400-63113800	Weak transcription	Right Atrium	heart
36	chr12:63109400-63114400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr12:63109400-63117600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr12:63109600-63112800	Weak transcription	Fetal Thymus	thymus
39	chr12:63109600-63113000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr12:63109600-63114400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr12:63109600-63114400	Weak transcription	Adipose Nuclei	Adipose
42	chr12:63109600-63114400	Weak transcription	Fetal Lung	lung
43	chr12:63109600-63114400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr12:63109600-63118000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr12:63109600-63118800	Weak transcription	Ovary	ovary
46	chr12:63109800-63112800	Enhancers	Hela-S3	cervix
47	chr12:63109800-63113000	Weak transcription	Fetal Intestine Small	intestine
48	chr12:63109800-63114200	Weak transcription	Fetal Stomach	stomach
49	chr12:63109800-63114800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr12:63110000-63112800	Weak transcription	Fetal Muscle Leg	muscle

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