Variant report
| Variant | rs11176649 |
|---|---|
| Chromosome Location | chr12:67639235-67639236 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:67638985..67641422-chr12:67661431..67664267,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111530 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11176565 | 1.00[AMR][1000 genomes] |
| rs11176600 | 1.00[AMR][1000 genomes] |
| rs11176632 | 1.00[AMR][1000 genomes] |
| rs11176648 | 1.00[AMR][1000 genomes] |
| rs12301230 | 1.00[AMR][1000 genomes] |
| rs12301290 | 1.00[AMR][1000 genomes] |
| rs12301392 | 1.00[AMR][1000 genomes] |
| rs12301453 | 1.00[AMR][1000 genomes] |
| rs12302266 | 1.00[AMR][1000 genomes] |
| rs12302524 | 1.00[AMR][1000 genomes] |
| rs12305775 | 1.00[AMR][1000 genomes] |
| rs12310041 | 1.00[AMR][1000 genomes] |
| rs12312066 | 1.00[AMR][1000 genomes] |
| rs12312713 | 1.00[AMR][1000 genomes] |
| rs12315232 | 1.00[AMR][1000 genomes] |
| rs12316486 | 1.00[AMR][1000 genomes] |
| rs12319094 | 1.00[AMR][1000 genomes] |
| rs12322809 | 1.00[AMR][1000 genomes] |
| rs13377685 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17854617 | 1.00[AMR][1000 genomes] |
| rs28545106 | 1.00[AMR][1000 genomes] |
| rs28646880 | 1.00[AMR][1000 genomes] |
| rs28677001 | 1.00[AMR][1000 genomes] |
| rs35314758 | 1.00[AMR][1000 genomes] |
| rs61685902 | 1.00[AMR][1000 genomes] |
| rs7298233 | 1.00[AMR][1000 genomes] |
| rs7967952 | 1.00[AMR][1000 genomes] |
| rs7970098 | 1.00[AMR][1000 genomes] |
| rs7976779 | 1.00[AMR][1000 genomes] |
| rs7978475 | 1.00[AMR][1000 genomes] |
| rs9652023 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054111 | chr12:67556780-67865542 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 4 | nsv899218 | chr12:67612129-67643840 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:67639200-67639800 | Enhancers | K562 | blood |
