Variant report

Variant	rs11176704
Chromosome Location	chr12:67768574-67768575
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67758294..67761671-chr12:67766936..67770020,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10878598	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11176668	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11176669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11176670	0.95[ASN][1000 genomes]
rs11176673	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11176686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11176689	1.00[ASN][1000 genomes]
rs11176703	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11176711	0.95[ASN][1000 genomes]
rs12302564	1.00[ASN][1000 genomes]
rs12305377	1.00[ASN][1000 genomes]
rs12306657	1.00[ASN][1000 genomes]
rs12311150	0.95[ASN][1000 genomes]
rs12314146	1.00[ASN][1000 genomes]
rs3087577	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3736630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs55646172	0.95[ASN][1000 genomes]
rs55809526	0.95[ASN][1000 genomes]
rs55809587	0.95[ASN][1000 genomes]
rs55906716	0.95[ASN][1000 genomes]
rs55978724	0.95[ASN][1000 genomes]
rs56224819	0.95[ASN][1000 genomes]
rs56728872	0.95[ASN][1000 genomes]
rs58114937	0.95[ASN][1000 genomes]
rs60009568	1.00[ASN][1000 genomes]
rs60072946	0.95[ASN][1000 genomes]
rs60077199	1.00[ASN][1000 genomes]
rs60104343	0.91[ASN][1000 genomes]
rs60971316	1.00[ASN][1000 genomes]
rs61195985	0.95[ASN][1000 genomes]
rs61219299	1.00[ASN][1000 genomes]
rs61281993	1.00[ASN][1000 genomes]
rs7137520	0.98[ASN][1000 genomes]
rs7296364	0.95[ASN][1000 genomes]
rs7298244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7307353	0.95[ASN][1000 genomes]
rs7312708	0.95[ASN][1000 genomes]
rs7954050	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7976686	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7978989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67760600-67770200	Weak transcription	Psoas Muscle	Psoas
2	chr12:67762000-67771200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr12:67762400-67771200	Weak transcription	HSMMtube	muscle

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