Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11177062	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11177066	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11177067	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11177070	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11177074	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11514279	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12369308	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12370401	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12370402	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17104851	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2069728	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3181032	0.89[CHB][hapmap]
rs3181035	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4913404	0.92[ASN][1000 genomes]
rs6581791	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7296336	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7296352	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7301168	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7315177	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74099921	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74099930	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7956688	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899220	chr12:68465709-68530956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68512400-68516200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:68513800-68516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:68514800-68516600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:68514800-68516600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:68515000-68516200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:68515400-68516600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:68515400-68516600	Enhancers	HSMMtube	muscle
8	chr12:68515400-68517200	Enhancers	HSMM	muscle
9	chr12:68515600-68516600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr12:68515800-68516200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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